1 Response_reg#1
4-114 aa · 111 aa · 45.9% of protein
Raw token
Response_reg:4:4.2e-17:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2G32_RS14335
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_015557345
ClassRRTypeLytTRLength242 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015557345#I2G32_RS14335Stable P2CS identifier used across views.
GenomeGCF_015557345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 242 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa242 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-226 aa · 86 aa · 35.5% of protein
Raw token
LytTR:141:3.26e-18:226:91:98- Raw architecture: Response_reg:4:4.2e-17:114:113:111#LytTR:141:3.26e-18:226:91:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015557345::NZ_JADNOC010000030.1::G00027
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span27341-28069Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015557345::NZ_JADNOC010000030.1::G00027Context members
I2G32_RS14335
Partner locus tags
I2G32_RS14335
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195518850.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2G32_RS14335Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNOC010000030.1Sequence record reported by the local genomic context database.
Genomic interval27 341-28 069 nt729 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span27 341-28 069 ntGCF_015557345::NZ_JADNOC010000030.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015557345::NZ_JADNOC010000030.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNOC010000030.1All displayed genes belong to this local TCS context.
Neighborhood span27 341-28 069 nt729 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 341 nt28 069 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2G32_RS14335GCF_015557345#I2G32_RS14335
RRLytTRCurrent focus
27 341-28 069 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015557345#I2G32_RS14335The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0851871
Simplified PFAM architecture for RROC_0851871
PFAM domain coverage: 200 / 242 aa (82.6%)
1 aa242 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[141-227]
- Domain count: 2
- Matched identifier: RROC_0851871
- Positioned domains: Response_reg 4-116 ; LytTR 141-227
Cluster members and taxonomy
Representative gene: GCF_015557345#I2G32_RS14335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_015557345
AssemblyASM1555734v1 · Scaffoldhaploid
Genome composition3 548 074 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 88 · HK 43 · RR 45CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key