1 HAMP#1
210-279 aa · 70 aa · 11.8% of protein
Raw token
HAMP:210:0.00000000000000219:279:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2G13_RS03430
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_015557305
ClassHKTypeClassicLength595 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015557305#I2G13_RS03430Stable P2CS identifier used across views.
GenomeGCF_015557305Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length595 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage288 / 595 aa (48.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa595 aa
Domain-by-domain annotation3 items
2 HisKA#2
290-359 aa · 70 aa · 11.8% of protein
Raw token
HisKA:290:1.71e-16:359:70:643 HATPase_c#3
423-570 aa · 148 aa · 24.9% of protein
Raw token
HATPase_c:423:1.26e-19:570:148:109- Raw architecture: HAMP:210:0.00000000000000219:279:70:69#HisKA:290:1.71e-16:359:70:64#HATPase_c:423:1.26e-19:570:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015557305::NZ_JADNOA010000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span833383-835955Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015557305::NZ_JADNOA010000001.1::G00006Context members
I2G13_RS03425I2G13_RS03430
Partner locus tags
I2G13_RS03425I2G13_RS03430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195523757.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2G13_RS03430Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNOA010000001.1Sequence record reported by the local genomic context database.
Genomic interval834 126-835 955 nt1 830 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span833 383-835 955 ntGCF_015557305::NZ_JADNOA010000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015557305::NZ_JADNOA010000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNOA010000001.1All displayed genes belong to this local TCS context.
Neighborhood span833 383-835 955 nt2 573 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
833 383 nt835 955 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2G13_RS03425GCF_015557305#I2G13_RS03425
RROmpR
833 383-834 114 nt · Forward (+)
I2G13_RS03430GCF_015557305#I2G13_RS03430
HKClassicCurrent focus
834 126-835 955 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015557305#I2G13_RS03430The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1083230
Simplified PFAM architecture for HKOC_1083230
PFAM domain coverage: 268 / 595 aa (45.0%)
1 aa595 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[228-279] | HisKA[291-359] | HATPase_c[423-569]
- Domain count: 3
- Matched identifier: HKOC_1083230
- Positioned domains: HAMP 228-279 ; HisKA 291-359 ; HATPase_c 423-569
Cluster members and taxonomy
Representative gene: GCF_015557305#I2G13_RS03430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_015557305
AssemblyASM1555730v1 · Scaffoldhaploid
Genome composition2 228 306 bp · 56,0% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 23 · HK 9 · RR 12CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key