1 HisKA#1
88-153 aa · 66 aa · 21.4% of protein
Raw token
HisKA:88:0.00000000808:153:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2E60_RS12250
Histidine kinase, Classic
Anaerostipes hadrus · GCF_015554695
ClassHKTypeClassicLength308 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015554695#I2E60_RS12250Stable P2CS identifier used across views.
GenomeGCF_015554695Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length308 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 308 aa (54.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa308 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
205-305 aa · 101 aa · 32.8% of protein
Raw token
HATPase_c:205:1.69e-26:305:101:109- Raw architecture: HisKA:88:0.00000000808:153:66:64#HATPase_c:205:1.69e-26:305:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015554695::NZ_JADNJB010000034.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span32527-34106Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015554695::NZ_JADNJB010000034.1::G00016Context members
I2E60_RS12250I2E60_RS12255
Partner locus tags
I2E60_RS12250I2E60_RS12255
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009319963.1Primary protein accession used for annex mappings.
UniProt accessionA0A174HHE8Primary UniProt accession resolved in the annex database.
UniProt IDA0A174HHE8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2E60_RS12250Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNJB010000034.1Sequence record reported by the local genomic context database.
Genomic interval32 527-33 453 nt927 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span32 527-34 106 ntGCF_015554695::NZ_JADNJB010000034.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015554695::NZ_JADNJB010000034.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNJB010000034.1All displayed genes belong to this local TCS context.
Neighborhood span32 527-34 106 nt1 580 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
32 527 nt34 106 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2E60_RS12250GCF_015554695#I2E60_RS12250
HKClassicCurrent focus
32 527-33 453 nt · Reverse (-)
I2E60_RS12255GCF_015554695#I2E60_RS12255
RROmpR
33 444-34 106 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404835#ARA33_RS09870Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2879991
Simplified PFAM architecture for HKOC_2879991
PFAM domain coverage: 172 / 308 aa (55.8%)
1 aa308 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[89-153] | HATPase_c[200-306]
- Domain count: 2
- Matched identifier: HKOC_2879991
- Positioned domains: HisKA 89-153 ; HATPase_c 200-306
Cluster members and taxonomy
Representative gene: GCF_001404835#ARA33_RS09870
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_015554695
AssemblyASM1555469v1 · Scaffoldhaploid
Genome composition3 245 115 bp · 36,5% GCAnaerostipes hadrus
Signal transduction countsGenes 53 · HK 28 · RR 24CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key