1 HisKA#1
88-153 aa · 66 aa · 21.4% of protein
Raw token
HisKA:88:0.00000000808:153:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA33_RS09870
Histidine kinase, Classic
Anaerostipes hadrus · GCF_001404835
ClassHKTypeClassicLength308 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404835#ARA33_RS09870Stable P2CS identifier used across views.
GenomeGCF_001404835Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length308 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 308 aa (54.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa308 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
205-305 aa · 101 aa · 32.8% of protein
Raw token
HATPase_c:205:1.69e-26:305:101:109- Raw architecture: HisKA:88:0.00000000808:153:66:64#HATPase_c:205:1.69e-26:305:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404835::NZ_CZAU01000019.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span54199-55778Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852520_02023RefSeq proteinWP_009319963.1
Context group ID
GCF_001404835::NZ_CZAU01000019.1::G00015Context members
ARA33_RS09865ARA33_RS09870
Partner locus tags
ARA33_RS09865ARA33_RS09870
Partner old locus tags
ERS852520_02022ERS852520_02023
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009319963.1Primary protein accession used for annex mappings.
UniProt accessionA0A174HHE8Primary UniProt accession resolved in the annex database.
UniProt IDA0A174HHE8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA33_RS09870Primary locus identifier stored in the genes table.
Old locus tagERS852520_02023Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAU01000019.1Sequence record reported by the local genomic context database.
Genomic interval54 852-55 778 nt927 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span54 199-55 778 ntGCF_001404835::NZ_CZAU01000019.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404835::NZ_CZAU01000019.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAU01000019.1All displayed genes belong to this local TCS context.
Neighborhood span54 199-55 778 nt1 580 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 199 nt55 778 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA33_RS09865GCF_001404835#ARA33_RS09865
RROmpR
54 199-54 861 nt · Forward (+)
ARA33_RS09870GCF_001404835#ARA33_RS09870
HKClassicCurrent focus
54 852-55 778 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404835#ARA33_RS09870The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2879991
Simplified PFAM architecture for HKOC_2879991
PFAM domain coverage: 172 / 308 aa (55.8%)
1 aa308 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[89-153] | HATPase_c[200-306]
- Domain count: 2
- Matched identifier: HKOC_2879991
- Positioned domains: HisKA 89-153 ; HATPase_c 200-306
Cluster members and taxonomy
Representative gene: GCF_001404835#ARA33_RS09870
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_001404835
Assembly14207_7#31 · Scaffoldhaploid
Genome composition3 562 647 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 57 · HK 28 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key