1 Response_reg#1
7-120 aa · 114 aa · 46.3% of protein
Raw token
Response_reg:7:0.000000000000138:120:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2F55_RS08535
Response regulator LytTR family
Ruminococcus sp. D55t1_190419_H1 · GCF_015554365
ClassRRTypeLytTRLength246 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015554365#I2F55_RS08535Stable P2CS identifier used across views.
GenomeGCF_015554365Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length246 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage199 / 246 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa246 aa
Domain-by-domain annotation2 items
2 LytTR#2
145-229 aa · 85 aa · 34.6% of protein
Raw token
LytTR:145:0.00000000000000147:229:90:98- Raw architecture: Response_reg:7:0.000000000000138:120:117:111#LytTR:145:0.00000000000000147:229:90:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015554365::NZ_JADNIK010000014.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span6596-7336Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015554365::NZ_JADNIK010000014.1::G00008Context members
I2F55_RS08535
Partner locus tags
I2F55_RS08535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195477949.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2F55_RS08535Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNIK010000014.1Sequence record reported by the local genomic context database.
Genomic interval6 596-7 336 nt741 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 596-7 336 ntGCF_015554365::NZ_JADNIK010000014.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015554365::NZ_JADNIK010000014.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNIK010000014.1All displayed genes belong to this local TCS context.
Neighborhood span6 596-7 336 nt741 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 596 nt7 336 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2F55_RS08535GCF_015554365#I2F55_RS08535
RRLytTRCurrent focus
6 596-7 336 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015554365#I2F55_RS08535The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0777860
Simplified PFAM architecture for RROC_0777860
PFAM domain coverage: 193 / 246 aa (78.5%)
1 aa246 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[13-119] | LytTR[143-228]
- Domain count: 2
- Matched identifier: RROC_0777860
- Positioned domains: Response_reg 13-119 ; LytTR 143-228
Cluster members and taxonomy
Representative gene: GCF_015554365#I2F55_RS08535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 130 · GCF_015554365
AssemblyASM1555436v1 · Scaffoldhaploid
Genome composition4 227 484 bp · 42,5% GCRuminococcus sp. D55t1_190419_H1
Signal transduction countsGenes 127 · HK 61 · RR 64CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key