1 dCache_1#1
41-272 aa · 232 aa · 39.7% of protein
Raw token
dCache_1:41:0.0000119:272:238:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2F55_RS00925
Histidine kinase, Classic
Ruminococcus sp. D55t1_190419_H1 · GCF_015554365
ClassHKTypeClassicLength585 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015554365#I2F55_RS00925Stable P2CS identifier used across views.
GenomeGCF_015554365Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length585 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage484 / 585 aa (82.7%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa585 aa
Domain-by-domain annotation4 items
2 HAMP#2
294-360 aa · 67 aa · 11.5% of protein
Raw token
HAMP:294:0.000000000183:360:67:693 His_kinase#3
377-457 aa · 81 aa · 13.8% of protein
Raw token
His_kinase:377:1.4e-31:457:81:804 HATPase_c#4
477-580 aa · 104 aa · 17.8% of protein
Raw token
HATPase_c:477:0.000000072:580:109:109- Raw architecture: dCache_1:41:0.0000119:272:238:195#HAMP:294:0.000000000183:360:67:69#His_kinase:377:1.4e-31:457:81:80#HATPase_c:477:0.000000072:580:109:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015554365::NZ_JADNIK010000001.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span220104-223374Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015554365::NZ_JADNIK010000001.1::G00023Context members
I2F55_RS00920I2F55_RS00925
Partner locus tags
I2F55_RS00920I2F55_RS00925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226840987.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2F55_RS00925Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNIK010000001.1Sequence record reported by the local genomic context database.
Genomic interval221 617-223 374 nt1 758 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span220 104-223 374 ntGCF_015554365::NZ_JADNIK010000001.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015554365::NZ_JADNIK010000001.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNIK010000001.1All displayed genes belong to this local TCS context.
Neighborhood span220 104-223 374 nt3 271 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
220 104 nt223 374 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2F55_RS00920GCF_015554365#I2F55_RS00920
RRunclassified
220 104-221 627 nt · Reverse (-)
I2F55_RS00925GCF_015554365#I2F55_RS00925
HKClassicCurrent focus
221 617-223 374 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300155#G4470_RS08230Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1138251
Simplified PFAM architecture for HKOC_1138251
PFAM domain coverage: 184 / 585 aa (31.5%)
1 aa585 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[377-457] | HATPase_c[477-579]
- Domain count: 2
- Matched identifier: HKOC_1138251
- Positioned domains: His_kinase 377-457 ; HATPase_c 477-579
Cluster members and taxonomy
Representative gene: GCF_013300155#G4470_RS08230
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 130 · GCF_015554365
AssemblyASM1555436v1 · Scaffoldhaploid
Genome composition4 227 484 bp · 42,5% GCRuminococcus sp. D55t1_190419_H1
Signal transduction countsGenes 127 · HK 61 · RR 64CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key