1 Response_reg#1
4-115 aa · 112 aa · 43.1% of protein
Raw token
Response_reg:4:9.52e-22:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2F55_RS03905
Response regulator, unclassified
Ruminococcus sp. D55t1_190419_H1 · GCF_015554365
ClassRRTypeunclassifiedLength260 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015554365#I2F55_RS03905Stable P2CS identifier used across views.
GenomeGCF_015554365Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length260 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 260 aa (73.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa260 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
163-204 aa · 42 aa · 16.2% of protein
Raw token
HTH_AraC:163:0.000000000074:204:42:423 HTH_AraC#3
218-254 aa · 37 aa · 14.2% of protein
Raw token
HTH_AraC:218:0.000000964:254:37:42- Raw architecture: Response_reg:4:9.52e-22:115:112:111#HTH_AraC:163:0.000000000074:204:42:42#HTH_AraC:218:0.000000964:254:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015554365::NZ_JADNIK010000005.1::G00066
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span73420-75986Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015554365::NZ_JADNIK010000005.1::G00066Context members
I2F55_RS03900I2F55_RS03905
Partner locus tags
I2F55_RS03900I2F55_RS03905
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_195409483.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1CKI7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1CKI7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2F55_RS03905Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNIK010000005.1Sequence record reported by the local genomic context database.
Genomic interval75 204-75 986 nt783 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span73 420-75 986 ntGCF_015554365::NZ_JADNIK010000005.1::G00066
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015554365::NZ_JADNIK010000005.1::G00066Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNIK010000005.1All displayed genes belong to this local TCS context.
Neighborhood span73 420-75 986 nt2 567 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 420 nt75 986 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2F55_RS03900GCF_015554365#I2F55_RS03900
HKClassic
73 420-75 153 nt · Forward (+)
I2F55_RS03905GCF_015554365#I2F55_RS03905
RRunclassifiedCurrent focus
75 204-75 986 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015551945#I2E10_RS11180Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0654853
Simplified PFAM architecture for RROC_0654853
PFAM domain coverage: 190 / 260 aa (73.1%)
1 aa260 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-114] | HTH_18[176-254]
- Domain count: 2
- Matched identifier: RROC_0654853
- Positioned domains: Response_reg 4-114 ; HTH_18 176-254
Cluster members and taxonomy
Representative gene: GCF_015551945#I2E10_RS11180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 130 · GCF_015554365
AssemblyASM1555436v1 · Scaffoldhaploid
Genome composition4 227 484 bp · 42,5% GCRuminococcus sp. D55t1_190419_H1
Signal transduction countsGenes 127 · HK 61 · RR 64CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key