1 HAMP#1
283-352 aa · 70 aa · 12.1% of protein
Raw token
HAMP:283:0.000000000137:352:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2F55_RS03900
Histidine kinase, Classic
Ruminococcus sp. D55t1_190419_H1 · GCF_015554365
ClassHKTypeClassicLength577 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015554365#I2F55_RS03900Stable P2CS identifier used across views.
GenomeGCF_015554365Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length577 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage252 / 577 aa (43.7%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa577 aa
Domain-by-domain annotation3 items
2 His_kinase#2
368-445 aa · 78 aa · 13.5% of protein
Raw token
His_kinase:368:9.37e-28:445:79:803 HATPase_c#3
464-567 aa · 104 aa · 18.0% of protein
Raw token
HATPase_c:464:0.0000000000314:567:106:109- Raw architecture: HAMP:283:0.000000000137:352:70:69#His_kinase:368:9.37e-28:445:79:80#HATPase_c:464:0.0000000000314:567:106:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015554365::NZ_JADNIK010000005.1::G00066
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span73420-75986Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015554365::NZ_JADNIK010000005.1::G00066Context members
I2F55_RS03900I2F55_RS03905
Partner locus tags
I2F55_RS03900I2F55_RS03905
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195409484.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2F55_RS03900Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNIK010000005.1Sequence record reported by the local genomic context database.
Genomic interval73 420-75 153 nt1 734 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span73 420-75 986 ntGCF_015554365::NZ_JADNIK010000005.1::G00066
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015554365::NZ_JADNIK010000005.1::G00066Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNIK010000005.1All displayed genes belong to this local TCS context.
Neighborhood span73 420-75 986 nt2 567 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 420 nt75 986 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2F55_RS03900GCF_015554365#I2F55_RS03900
HKClassicCurrent focus
73 420-75 153 nt · Forward (+)
I2F55_RS03905GCF_015554365#I2F55_RS03905
RRunclassified
75 204-75 986 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015551945#I2E10_RS11185Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1179514
Simplified PFAM architecture for HKOC_1179514
PFAM domain coverage: 231 / 577 aa (40.0%)
1 aa577 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[302-350] | His_kinase[368-444] | HATPase_c[464-568]
- Domain count: 3
- Matched identifier: HKOC_1179514
- Positioned domains: HAMP 302-350 ; His_kinase 368-444 ; HATPase_c 464-568
Cluster members and taxonomy
Representative gene: GCF_015551945#I2E10_RS11185
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 130 · GCF_015554365
AssemblyASM1555436v1 · Scaffoldhaploid
Genome composition4 227 484 bp · 42,5% GCRuminococcus sp. D55t1_190419_H1
Signal transduction countsGenes 127 · HK 61 · RR 64CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key