1 HisKA#1
317-382 aa · 66 aa · 9.4% of protein
Raw token
HisKA:317:6.78e-18:382:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2F55_RS02750
Histidine kinase, Hybrid
Ruminococcus sp. D55t1_190419_H1 · GCF_015554365
ClassHKTypeHybridLength701 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015554365#I2F55_RS02750Stable P2CS identifier used across views.
GenomeGCF_015554365Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length701 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage301 / 701 aa (42.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa701 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
431-548 aa · 118 aa · 16.8% of protein
Raw token
HATPase_c:431:3.14e-25:548:119:1093 Response_reg#3
575-691 aa · 117 aa · 16.7% of protein
Raw token
Response_reg:575:2.22e-26:691:117:111- Raw architecture: HisKA:317:6.78e-18:382:66:64#HATPase_c:431:3.14e-25:548:119:109#Response_reg:575:2.22e-26:691:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015554365::NZ_JADNIK010000003.1::G00056
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span132101-134206Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015554365::NZ_JADNIK010000003.1::G00056Context members
I2F55_RS02750
Partner locus tags
I2F55_RS02750
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195391640.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2F55_RS02750Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNIK010000003.1Sequence record reported by the local genomic context database.
Genomic interval132 101-134 206 nt2 106 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span132 101-134 206 ntGCF_015554365::NZ_JADNIK010000003.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015554365::NZ_JADNIK010000003.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNIK010000003.1All displayed genes belong to this local TCS context.
Neighborhood span132 101-134 206 nt2 106 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
132 101 nt134 206 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2F55_RS02750GCF_015554365#I2F55_RS02750
HKHybridCurrent focus
132 101-134 206 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015552475#I2D95_RS00775Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0767918
Simplified PFAM architecture for HKOC_0767918
PFAM domain coverage: 298 / 701 aa (42.5%)
1 aa701 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[317-382] | HATPase_c[432-547] | Response_reg[575-690]
- Domain count: 3
- Matched identifier: HKOC_0767918
- Positioned domains: HisKA 317-382 ; HATPase_c 432-547 ; Response_reg 575-690
Cluster members and taxonomy
Representative gene: GCF_015552475#I2D95_RS00775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 130 · GCF_015554365
AssemblyASM1555436v1 · Scaffoldhaploid
Genome composition4 227 484 bp · 42,5% GCRuminococcus sp. D55t1_190419_H1
Signal transduction countsGenes 127 · HK 61 · RR 64CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key