1 HAMP#1
300-372 aa · 73 aa · 12.0% of protein
Raw token
HAMP:300:0.0000000000548:372:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2F55_RS01865
Histidine kinase, Classic
Ruminococcus sp. D55t1_190419_H1 · GCF_015554365
ClassHKTypeClassicLength609 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015554365#I2F55_RS01865Stable P2CS identifier used across views.
GenomeGCF_015554365Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length609 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage217 / 609 aa (35.6%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa609 aa
Domain-by-domain annotation3 items
2 His_kinase#2
387-466 aa · 80 aa · 13.1% of protein
Raw token
His_kinase:387:3.26e-29:466:80:803 HATPase_c#3
473-536 aa · 64 aa · 10.5% of protein
Raw token
HATPase_c:473:0.000000103:536:64:109- Raw architecture: HAMP:300:0.0000000000548:372:73:69#His_kinase:387:3.26e-29:466:80:80#HATPase_c:473:0.000000103:536:64:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015554365::NZ_JADNIK010000002.1::G00044
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span142162-144756Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015554365::NZ_JADNIK010000002.1::G00044Context members
I2F55_RS01860I2F55_RS01865
Partner locus tags
I2F55_RS01860I2F55_RS01865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195477231.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2F55_RS01865Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNIK010000002.1Sequence record reported by the local genomic context database.
Genomic interval142 927-144 756 nt1 830 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span142 162-144 756 ntGCF_015554365::NZ_JADNIK010000002.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015554365::NZ_JADNIK010000002.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNIK010000002.1All displayed genes belong to this local TCS context.
Neighborhood span142 162-144 756 nt2 595 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
142 162 nt144 756 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2F55_RS01860GCF_015554365#I2F55_RS01860
RRunclassified
142 162-142 905 nt · Reverse (-)
I2F55_RS01865GCF_015554365#I2F55_RS01865
HKClassicCurrent focus
142 927-144 756 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015554365#I2F55_RS01865The current gene is the representative for this cluster.
PFAM architectureHis_kinase1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1010531
Simplified PFAM architecture for HKOC_1010531
PFAM domain coverage: 77 / 609 aa (12.6%)
1 aa609 aa
His_kinase
- Simplified architecture: His_kinase
- Raw architecture: His_kinase[389-465]
- Domain count: 1
- Matched identifier: HKOC_1010531
- Positioned domains: His_kinase 389-465
Cluster members and taxonomy
Representative gene: GCF_015554365#I2F55_RS01865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 130 · GCF_015554365
AssemblyASM1555436v1 · Scaffoldhaploid
Genome composition4 227 484 bp · 42,5% GCRuminococcus sp. D55t1_190419_H1
Signal transduction countsGenes 127 · HK 61 · RR 64CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key