1 His_kinase#1
123-202 aa · 80 aa · 22.9% of protein
Raw token
His_kinase:123:4.58e-34:202:80:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2F55_RS01690
Histidine kinase, Classic
Ruminococcus sp. D55t1_190419_H1 · GCF_015554365
ClassHKTypeClassicLength349 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015554365#I2F55_RS01690Stable P2CS identifier used across views.
GenomeGCF_015554365Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length349 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 349 aa (54.2%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa349 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
226-334 aa · 109 aa · 31.2% of protein
Raw token
HATPase_c:226:0.000000000000821:334:109:109- Raw architecture: His_kinase:123:4.58e-34:202:80:80#HATPase_c:226:0.000000000000821:334:109:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015554365::NZ_JADNIK010000002.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span96407-99110Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015554365::NZ_JADNIK010000002.1::G00043Context members
I2F55_RS01685I2F55_RS01690
Partner locus tags
I2F55_RS01685I2F55_RS01690
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_148461526.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2H9Q0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2H9Q0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2F55_RS01690Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNIK010000002.1Sequence record reported by the local genomic context database.
Genomic interval98 061-99 110 nt1 050 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span96 407-99 110 ntGCF_015554365::NZ_JADNIK010000002.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015554365::NZ_JADNIK010000002.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNIK010000002.1All displayed genes belong to this local TCS context.
Neighborhood span96 407-99 110 nt2 704 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 407 nt99 110 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2F55_RS01685GCF_015554365#I2F55_RS01685
RRunclassified
96 407-98 053 nt · Forward (+)
I2F55_RS01690GCF_015554365#I2F55_RS01690
HKClassicCurrent focus
98 061-99 110 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015561345#I2041_RS11905Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2781454
Simplified PFAM architecture for HKOC_2781454
PFAM domain coverage: 190 / 354 aa (53.7%)
1 aa354 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[128-207] | HATPase_c[231-340]
- Domain count: 2
- Matched identifier: HKOC_2781454
- Positioned domains: His_kinase 128-207 ; HATPase_c 231-340
Cluster members and taxonomy
Representative gene: GCF_015561345#I2041_RS11905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 130 · GCF_015554365
AssemblyASM1555436v1 · Scaffoldhaploid
Genome composition4 227 484 bp · 42,5% GCRuminococcus sp. D55t1_190419_H1
Signal transduction countsGenes 127 · HK 61 · RR 64CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key