1 dCache_1#1
111-271 aa · 161 aa · 28.0% of protein
Raw token
dCache_1:111:0.0000000182:271:170:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2F55_RS01615
Histidine kinase, Classic
Ruminococcus sp. D55t1_190419_H1 · GCF_015554365
ClassHKTypeClassicLength576 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015554365#I2F55_RS01615Stable P2CS identifier used across views.
GenomeGCF_015554365Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length576 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage404 / 576 aa (70.1%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa576 aa
Domain-by-domain annotation4 items
2 HAMP#2
290-359 aa · 70 aa · 12.2% of protein
Raw token
HAMP:290:0.0000000000000562:359:70:693 His_kinase#3
375-449 aa · 75 aa · 13.0% of protein
Raw token
His_kinase:375:2e-24:449:75:804 HATPase_c#4
473-570 aa · 98 aa · 17.0% of protein
Raw token
HATPase_c:473:0.00000602:570:105:109- Raw architecture: dCache_1:111:0.0000000182:271:170:195#HAMP:290:0.0000000000000562:359:70:69#His_kinase:375:2e-24:449:75:80#HATPase_c:473:0.00000602:570:105:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015554365::NZ_JADNIK010000002.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span78034-81329Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015554365::NZ_JADNIK010000002.1::G00042Context members
I2F55_RS01610I2F55_RS01615
Partner locus tags
I2F55_RS01610I2F55_RS01615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195379563.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2F55_RS01615Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNIK010000002.1Sequence record reported by the local genomic context database.
Genomic interval79 599-81 329 nt1 731 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span78 034-81 329 ntGCF_015554365::NZ_JADNIK010000002.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015554365::NZ_JADNIK010000002.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNIK010000002.1All displayed genes belong to this local TCS context.
Neighborhood span78 034-81 329 nt3 296 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
78 034 nt81 329 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2F55_RS01610GCF_015554365#I2F55_RS01610
RRunclassified
78 034-79 602 nt · Reverse (-)
I2F55_RS01615GCF_015554365#I2F55_RS01615
HKClassicCurrent focus
79 599-81 329 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015551645#I2D69_RS06115Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1185146
Simplified PFAM architecture for HKOC_1185146
PFAM domain coverage: 127 / 576 aa (22.0%)
1 aa576 aa
HAMPHis_kinase
- Simplified architecture: HAMP + His_kinase
- Raw architecture: HAMP[308-358] | His_kinase[375-450]
- Domain count: 2
- Matched identifier: HKOC_1185146
- Positioned domains: HAMP 308-358 ; His_kinase 375-450
Cluster members and taxonomy
Representative gene: GCF_015551645#I2D69_RS06115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 130 · GCF_015554365
AssemblyASM1555436v1 · Scaffoldhaploid
Genome composition4 227 484 bp · 42,5% GCRuminococcus sp. D55t1_190419_H1
Signal transduction countsGenes 127 · HK 61 · RR 64CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key