1 Response_reg#1
6-116 aa · 111 aa · 31.2% of protein
Raw token
Response_reg:6:5.2e-27:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2F55_RS01400
Response regulator, unclassified
Ruminococcus sp. D55t1_190419_H1 · GCF_015554365
ClassRRTypeunclassifiedLength356 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015554365#I2F55_RS01400Stable P2CS identifier used across views.
GenomeGCF_015554365Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length356 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 356 aa (53.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa356 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
260-301 aa · 42 aa · 11.8% of protein
Raw token
HTH_AraC:260:0.000000177:301:42:423 HTH_AraC#3
312-348 aa · 37 aa · 10.4% of protein
Raw token
HTH_AraC:312:0.0000000381:348:37:42- Raw architecture: Response_reg:6:5.2e-27:116:111:111#HTH_AraC:260:0.000000177:301:42:42#HTH_AraC:312:0.0000000381:348:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015554365::NZ_JADNIK010000002.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25103-27941Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015554365::NZ_JADNIK010000002.1::G00041Context members
I2F55_RS01395I2F55_RS01400
Partner locus tags
I2F55_RS01395I2F55_RS01400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173769400.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2H5S8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2H5S8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2F55_RS01400Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNIK010000002.1Sequence record reported by the local genomic context database.
Genomic interval26 871-27 941 nt1 071 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span25 103-27 941 ntGCF_015554365::NZ_JADNIK010000002.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015554365::NZ_JADNIK010000002.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNIK010000002.1All displayed genes belong to this local TCS context.
Neighborhood span25 103-27 941 nt2 839 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 103 nt27 941 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2F55_RS01395GCF_015554365#I2F55_RS01395
HKClassic
25 103-26 836 nt · Forward (+)
I2F55_RS01400GCF_015554365#I2F55_RS01400
RRunclassifiedCurrent focus
26 871-27 941 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302345#G5B17_RS04220Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0467395
Simplified PFAM architecture for RROC_0467395
PFAM domain coverage: 189 / 356 aa (53.1%)
1 aa356 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[273-349]
- Domain count: 2
- Matched identifier: RROC_0467395
- Positioned domains: Response_reg 5-116 ; HTH_18 273-349
Cluster members and taxonomy
Representative gene: GCF_013302345#G5B17_RS04220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 130 · GCF_015554365
AssemblyASM1555436v1 · Scaffoldhaploid
Genome composition4 227 484 bp · 42,5% GCRuminococcus sp. D55t1_190419_H1
Signal transduction countsGenes 127 · HK 61 · RR 64CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key