1 Response_reg#1
4-115 aa · 112 aa · 21.7% of protein
Raw token
Response_reg:4:3.51e-26:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2F55_RS00400
Response regulator, unclassified
Ruminococcus sp. D55t1_190419_H1 · GCF_015554365
ClassRRTypeunclassifiedLength515 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015554365#I2F55_RS00400Stable P2CS identifier used across views.
GenomeGCF_015554365Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length515 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage181 / 515 aa (35.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa515 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
429-462 aa · 34 aa · 6.6% of protein
Raw token
HTH_AraC:429:0.00000067:462:34:423 HTH_AraC#3
477-511 aa · 35 aa · 6.8% of protein
Raw token
HTH_AraC:477:0.00000016:511:35:42- Raw architecture: Response_reg:4:3.51e-26:115:112:111#HTH_AraC:429:0.00000067:462:34:42#HTH_AraC:477:0.00000016:511:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015554365::NZ_JADNIK010000001.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span83385-86850Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015554365::NZ_JADNIK010000001.1::G00020Context members
I2F55_RS00395I2F55_RS00400
Partner locus tags
I2F55_RS00395I2F55_RS00400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195476942.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2F55_RS00400Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNIK010000001.1Sequence record reported by the local genomic context database.
Genomic interval85 303-86 850 nt1 548 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span83 385-86 850 ntGCF_015554365::NZ_JADNIK010000001.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015554365::NZ_JADNIK010000001.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNIK010000001.1All displayed genes belong to this local TCS context.
Neighborhood span83 385-86 850 nt3 466 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 385 nt86 850 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2F55_RS00395GCF_015554365#I2F55_RS00395
HKClassic
83 385-85 232 nt · Reverse (-)
I2F55_RS00400GCF_015554365#I2F55_RS00400
RRunclassifiedCurrent focus
85 303-86 850 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015554365#I2F55_RS00400The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0137020
Simplified PFAM architecture for RROC_0137020
PFAM domain coverage: 301 / 515 aa (58.4%)
1 aa515 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-115] | GGDEF_2[167-277] | HTH_18[435-512]
- Domain count: 3
- Matched identifier: RROC_0137020
- Positioned domains: Response_reg 4-115 ; GGDEF_2 167-277 ; HTH_18 435-512
Cluster members and taxonomy
Representative gene: GCF_015554365#I2F55_RS00400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 130 · GCF_015554365
AssemblyASM1555436v1 · Scaffoldhaploid
Genome composition4 227 484 bp · 42,5% GCRuminococcus sp. D55t1_190419_H1
Signal transduction countsGenes 127 · HK 61 · RR 64CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key