1 dCache_1#1
190-299 aa · 110 aa · 17.9% of protein
Raw token
dCache_1:190:0.000065:299:116:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2F55_RS00395
Histidine kinase, Classic
Ruminococcus sp. D55t1_190419_H1 · GCF_015554365
ClassHKTypeClassicLength615 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015554365#I2F55_RS00395Stable P2CS identifier used across views.
GenomeGCF_015554365Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length615 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage366 / 615 aa (59.5%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa615 aa
Domain-by-domain annotation4 items
2 HAMP#2
316-385 aa · 70 aa · 11.4% of protein
Raw token
HAMP:316:0.00000000567:385:71:693 His_kinase#3
400-479 aa · 80 aa · 13.0% of protein
Raw token
His_kinase:400:1.19e-27:479:80:804 HATPase_c#4
499-604 aa · 106 aa · 17.2% of protein
Raw token
HATPase_c:499:0.000000000000429:604:109:109- Raw architecture: dCache_1:190:0.000065:299:116:195#HAMP:316:0.00000000567:385:71:69#His_kinase:400:1.19e-27:479:80:80#HATPase_c:499:0.000000000000429:604:109:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015554365::NZ_JADNIK010000001.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span83385-86850Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015554365::NZ_JADNIK010000001.1::G00020Context members
I2F55_RS00395I2F55_RS00400
Partner locus tags
I2F55_RS00395I2F55_RS00400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195476940.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2F55_RS00395Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNIK010000001.1Sequence record reported by the local genomic context database.
Genomic interval83 385-85 232 nt1 848 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span83 385-86 850 ntGCF_015554365::NZ_JADNIK010000001.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015554365::NZ_JADNIK010000001.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNIK010000001.1All displayed genes belong to this local TCS context.
Neighborhood span83 385-86 850 nt3 466 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 385 nt86 850 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2F55_RS00395GCF_015554365#I2F55_RS00395
HKClassicCurrent focus
83 385-85 232 nt · Reverse (-)
I2F55_RS00400GCF_015554365#I2F55_RS00400
RRunclassified
85 303-86 850 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015554365#I2F55_RS00395The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0989795
Simplified PFAM architecture for HKOC_0989795
PFAM domain coverage: 184 / 615 aa (29.9%)
1 aa615 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[400-478] | HATPase_c[499-603]
- Domain count: 2
- Matched identifier: HKOC_0989795
- Positioned domains: His_kinase 400-478 ; HATPase_c 499-603
Cluster members and taxonomy
Representative gene: GCF_015554365#I2F55_RS00395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 130 · GCF_015554365
AssemblyASM1555436v1 · Scaffoldhaploid
Genome composition4 227 484 bp · 42,5% GCRuminococcus sp. D55t1_190419_H1
Signal transduction countsGenes 127 · HK 61 · RR 64CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key