1 dCache_1#1
46-291 aa · 246 aa · 40.7% of protein
Raw token
dCache_1:46:4.16e-18:291:250:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2F55_RS00355
Histidine kinase, Classic
Ruminococcus sp. D55t1_190419_H1 · GCF_015554365
ClassHKTypeClassicLength604 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015554365#I2F55_RS00355Stable P2CS identifier used across views.
GenomeGCF_015554365Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length604 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage505 / 604 aa (83.6%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa604 aa
Domain-by-domain annotation4 items
2 HAMP#2
310-380 aa · 71 aa · 11.8% of protein
Raw token
HAMP:310:0.00000000000000118:380:71:693 His_kinase#3
395-474 aa · 80 aa · 13.2% of protein
Raw token
His_kinase:395:4.09e-35:474:80:804 HATPase_c#4
490-597 aa · 108 aa · 17.9% of protein
Raw token
HATPase_c:490:2.42e-17:597:112:109- Raw architecture: dCache_1:46:4.16e-18:291:250:195#HAMP:310:0.00000000000000118:380:71:69#His_kinase:395:4.09e-35:474:80:80#HATPase_c:490:2.42e-17:597:112:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015554365::NZ_JADNIK010000001.1::G00019
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span71854-73668Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015554365::NZ_JADNIK010000001.1::G00019Context members
I2F55_RS00355
Partner locus tags
I2F55_RS00355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_148461185.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2F55_RS00355Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNIK010000001.1Sequence record reported by the local genomic context database.
Genomic interval71 854-73 668 nt1 815 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span71 854-73 668 ntGCF_015554365::NZ_JADNIK010000001.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015554365::NZ_JADNIK010000001.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNIK010000001.1All displayed genes belong to this local TCS context.
Neighborhood span71 854-73 668 nt1 815 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 854 nt73 668 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2F55_RS00355GCF_015554365#I2F55_RS00355
HKClassicCurrent focus
71 854-73 668 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300845#G5B24_RS01965Use this link to inspect the representative gene detail.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1034345
Simplified PFAM architecture for HKOC_1034345
PFAM domain coverage: 478 / 604 aa (79.1%)
1 aa604 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[54-291] | HAMP[326-380] | His_kinase[395-474] | HATPase_c[492-596]
- Domain count: 4
- Matched identifier: HKOC_1034345
- Positioned domains: dCache_1 54-291 ; HAMP 326-380 ; His_kinase 395-474 ; HATPase_c 492-596
Cluster members and taxonomy
Representative gene: GCF_013300845#G5B24_RS01965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 130 · GCF_015554365
AssemblyASM1555436v1 · Scaffoldhaploid
Genome composition4 227 484 bp · 42,5% GCRuminococcus sp. D55t1_190419_H1
Signal transduction countsGenes 127 · HK 61 · RR 64CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key