1 PAS_3#1
170-260 aa · 91 aa · 8.5% of protein
Raw token
PAS_3:170:3.42e-20:260:91:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2F55_RS00115
Histidine kinase, Hybrid
Ruminococcus sp. D55t1_190419_H1 · GCF_015554365
ClassHKTypeHybridLength1072 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015554365#I2F55_RS00115Stable P2CS identifier used across views.
GenomeGCF_015554365Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length1072 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage507 / 1072 aa (47.3%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1072 aa
Domain-by-domain annotation5 items
2 HisKA#2
562-628 aa · 67 aa · 6.3% of protein
Raw token
HisKA:562:2.51e-16:628:67:643 HATPase_c#3
675-789 aa · 115 aa · 10.7% of protein
Raw token
HATPase_c:675:1.11e-30:789:115:1094 Response_reg#4
809-925 aa · 117 aa · 10.9% of protein
Raw token
Response_reg:809:1.02e-18:925:117:1115 Response_reg#5
953-1069 aa · 117 aa · 10.9% of protein
Raw token
Response_reg:953:1.64e-29:1069:117:111- Raw architecture: PAS_3:170:3.42e-20:260:91:89#HisKA:562:2.51e-16:628:67:64#HATPase_c:675:1.11e-30:789:115:109#Response_reg:809:1.02e-18:925:117:111#Response_reg:953:1.64e-29:1069:117:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015554365::NZ_JADNIK010000001.1::G00016
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span18358-21576Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015554365::NZ_JADNIK010000001.1::G00016Context members
I2F55_RS00115
Partner locus tags
I2F55_RS00115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195476880.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2F55_RS00115Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNIK010000001.1Sequence record reported by the local genomic context database.
Genomic interval18 358-21 576 nt3 219 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 358-21 576 ntGCF_015554365::NZ_JADNIK010000001.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015554365::NZ_JADNIK010000001.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNIK010000001.1All displayed genes belong to this local TCS context.
Neighborhood span18 358-21 576 nt3 219 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 358 nt21 576 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2F55_RS00115GCF_015554365#I2F55_RS00115
HKHybridCurrent focus
18 358-21 576 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015554365#I2F55_RS00115The current gene is the representative for this cluster.
PFAM architecturePAS_3 + HisKA + HATPase_c + Response_reg + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0245244
Simplified PFAM architecture for HKOC_0245244
PFAM domain coverage: 507 / 1072 aa (47.3%)
1 aa1072 aa
PAS_3HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: PAS_3 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: PAS_3[170-260] | HisKA[562-628] | HATPase_c[675-791] | Response_reg[809-924] | Response_reg[953-1068]
- Domain count: 5
- Matched identifier: HKOC_0245244
- Positioned domains: PAS_3 170-260 ; HisKA 562-628 ; HATPase_c 675-791 ; Response_reg 809-924 ; Response_reg 953-1068
Cluster members and taxonomy
Representative gene: GCF_015554365#I2F55_RS00115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 130 · GCF_015554365
AssemblyASM1555436v1 · Scaffoldhaploid
Genome composition4 227 484 bp · 42,5% GCRuminococcus sp. D55t1_190419_H1
Signal transduction countsGenes 127 · HK 61 · RR 64CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key