1 Response_reg#1
6-119 aa · 114 aa · 35.8% of protein
Raw token
Response_reg:6:3.22e-31:119:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D66_RS14235
Response regulator, unclassified
Dorea longicatena · GCF_015553305
ClassRRTypeunclassifiedLength318 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015553305#I2D66_RS14235Stable P2CS identifier used across views.
GenomeGCF_015553305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length318 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage114 / 318 aa (35.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa318 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:3.22e-31:119:114:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015553305::NZ_JADNGJ010000026.1::G00037
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span19298-20254Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015553305::NZ_JADNGJ010000026.1::G00037Context members
I2D66_RS14235
Partner locus tags
I2D66_RS14235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243259928.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D66_RS14235Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNGJ010000026.1Sequence record reported by the local genomic context database.
Genomic interval19 298-20 254 nt957 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span19 298-20 254 ntGCF_015553305::NZ_JADNGJ010000026.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015553305::NZ_JADNGJ010000026.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNGJ010000026.1All displayed genes belong to this local TCS context.
Neighborhood span19 298-20 254 nt957 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 298 nt20 254 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2D66_RS14235GCF_015553305#I2D66_RS14235
RRunclassifiedCurrent focus
19 298-20 254 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015553305#I2D66_RS14235The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_22 domains in the representative PFAM annotation.
PFAM architecture for RROC_0536319
Simplified PFAM architecture for RROC_0536319
PFAM domain coverage: 203 / 318 aa (63.8%)
1 aa318 aa
Response_regGGDEF_2
- Simplified architecture: Response_reg + GGDEF_2
- Raw architecture: Response_reg[6-118] | GGDEF_2[202-291]
- Domain count: 2
- Matched identifier: RROC_0536319
- Positioned domains: Response_reg 6-118 ; GGDEF_2 202-291
Cluster members and taxonomy
Representative gene: GCF_015553305#I2D66_RS14235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_015553305
AssemblyASM1555330v1 · Contighaploid
Genome composition2 908 332 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 68 · HK 34 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key