1 HisKA#1
51-115 aa · 65 aa · 24.3% of protein
Raw token
HisKA:51:0.000000000821:115:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D66_RS00970
Histidine kinase, Classic
Dorea longicatena · GCF_015553305
ClassHKTypeClassicLength268 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015553305#I2D66_RS00970Stable P2CS identifier used across views.
GenomeGCF_015553305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length268 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 268 aa (63.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa268 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
160-265 aa · 106 aa · 39.6% of protein
Raw token
HATPase_c:160:9.08e-31:265:106:109- Raw architecture: HisKA:51:0.000000000821:115:65:64#HATPase_c:160:9.08e-31:265:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015553305::NZ_JADNGJ010000012.1::G00034
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1328-2134Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015553305::NZ_JADNGJ010000012.1::G00034Context members
I2D66_RS00970
Partner locus tags
I2D66_RS00970
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195369169.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D66_RS00970Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNGJ010000012.1Sequence record reported by the local genomic context database.
Genomic interval1 328-2 134 nt807 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 328-2 134 ntGCF_015553305::NZ_JADNGJ010000012.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015553305::NZ_JADNGJ010000012.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNGJ010000012.1All displayed genes belong to this local TCS context.
Neighborhood span1 328-2 134 nt807 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 328 nt2 134 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2D66_RS00970GCF_015553305#I2D66_RS00970
HKClassicCurrent focus
1 328-2 134 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003439785#DXB16_RS03900Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2881438
Simplified PFAM architecture for HKOC_2881438
PFAM domain coverage: 170 / 306 aa (55.6%)
1 aa306 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[88-153] | HATPase_c[201-304]
- Domain count: 2
- Matched identifier: HKOC_2881438
- Positioned domains: HisKA 88-153 ; HATPase_c 201-304
Cluster members and taxonomy
Representative gene: GCF_003439785#DXB16_RS03900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_015553305
AssemblyASM1555330v1 · Contighaploid
Genome composition2 908 332 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 68 · HK 34 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key