1 HisKA#1
142-208 aa · 67 aa · 18.4% of protein
Raw token
HisKA:142:0.00000000000635:208:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D66_RS12040
Histidine kinase, Classic
Dorea longicatena · GCF_015553305
ClassHKTypeClassicLength364 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015553305#I2D66_RS12040Stable P2CS identifier used across views.
GenomeGCF_015553305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length364 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 364 aa (48.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa364 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
253-362 aa · 110 aa · 30.2% of protein
Raw token
HATPase_c:253:3.44e-23:362:111:109- Raw architecture: HisKA:142:0.00000000000635:208:67:64#HATPase_c:253:3.44e-23:362:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015553305::NZ_JADNGJ010000100.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8513-10365Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015553305::NZ_JADNGJ010000100.1::G00027Context members
I2D66_RS12040I2D66_RS12045
Partner locus tags
I2D66_RS12040I2D66_RS12045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006428432.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N9JVX1Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N9JVX1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D66_RS12040Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNGJ010000100.1Sequence record reported by the local genomic context database.
Genomic interval8 513-9 649 nt1 137 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 513-10 365 ntGCF_015553305::NZ_JADNGJ010000100.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015553305::NZ_JADNGJ010000100.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNGJ010000100.1All displayed genes belong to this local TCS context.
Neighborhood span8 513-10 365 nt1 853 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 513 nt10 365 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2D66_RS12040GCF_015553305#I2D66_RS12040
HKClassicCurrent focus
8 513-9 649 nt · Forward (+)
I2D66_RS12045GCF_015553305#I2D66_RS12045
RROmpR
9 652-10 365 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154065#DORLON_RS11235Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2724747
Simplified PFAM architecture for HKOC_2724747
PFAM domain coverage: 282 / 364 aa (77.5%)
1 aa364 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[22-128] | HisKA[142-207] | HATPase_c[254-362]
- Domain count: 3
- Matched identifier: HKOC_2724747
- Positioned domains: DUF4118 22-128 ; HisKA 142-207 ; HATPase_c 254-362
Cluster members and taxonomy
Representative gene: GCF_000154065#DORLON_RS11235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_015553305
AssemblyASM1555330v1 · Contighaploid
Genome composition2 908 332 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 68 · HK 34 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key