1 HAMP#1
292-361 aa · 70 aa · 11.8% of protein
Raw token
HAMP:292:0.000000000000219:361:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D66_RS10655
Histidine kinase, Classic
Dorea longicatena · GCF_015553305
ClassHKTypeClassicLength592 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015553305#I2D66_RS10655Stable P2CS identifier used across views.
GenomeGCF_015553305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length592 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage263 / 592 aa (44.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa592 aa
Domain-by-domain annotation3 items
2 His_kinase#2
376-455 aa · 80 aa · 13.5% of protein
Raw token
His_kinase:376:1.34e-34:455:80:803 HATPase_c#3
471-583 aa · 113 aa · 19.1% of protein
Raw token
HATPase_c:471:0.0000000196:583:114:109- Raw architecture: HAMP:292:0.000000000000219:361:70:69#His_kinase:376:1.34e-34:455:80:80#HATPase_c:471:0.0000000196:583:114:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015553305::NZ_JADNGJ010000083.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17984-21351Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015553305::NZ_JADNGJ010000083.1::G00025Context members
I2D66_RS10655I2D66_RS10660
Partner locus tags
I2D66_RS10655I2D66_RS10660
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195369594.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D66_RS10655Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNGJ010000083.1Sequence record reported by the local genomic context database.
Genomic interval17 984-19 762 nt1 779 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 984-21 351 ntGCF_015553305::NZ_JADNGJ010000083.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015553305::NZ_JADNGJ010000083.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNGJ010000083.1All displayed genes belong to this local TCS context.
Neighborhood span17 984-21 351 nt3 368 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 984 nt21 351 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2D66_RS10655GCF_015553305#I2D66_RS10655
HKClassicCurrent focus
17 984-19 762 nt · Reverse (-)
I2D66_RS10660GCF_015553305#I2D66_RS10660
RRunclassified
19 759-21 351 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015553305#I2D66_RS10655The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1101721
Simplified PFAM architecture for HKOC_1101721
PFAM domain coverage: 241 / 592 aa (40.7%)
1 aa592 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[312-361] | His_kinase[377-453] | HATPase_c[471-584]
- Domain count: 3
- Matched identifier: HKOC_1101721
- Positioned domains: HAMP 312-361 ; His_kinase 377-453 ; HATPase_c 471-584
Cluster members and taxonomy
Representative gene: GCF_015553305#I2D66_RS10655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_015553305
AssemblyASM1555330v1 · Contighaploid
Genome composition2 908 332 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 68 · HK 34 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key