1 Response_reg#1
17-126 aa · 110 aa · 46.6% of protein
Raw token
Response_reg:17:5.43e-34:126:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D66_RS06130
Response regulator OmpR family
Dorea longicatena · GCF_015553305
ClassRRTypeOmpRLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015553305#I2D66_RS06130Stable P2CS identifier used across views.
GenomeGCF_015553305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 236 aa (77.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-232 aa · 73 aa · 30.9% of protein
Raw token
Trans_reg_C:160:2.05e-25:232:75:77- Raw architecture: Response_reg:17:5.43e-34:126:110:111#Trans_reg_C:160:2.05e-25:232:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015553305::NZ_JADNGJ010000053.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span22218-23971Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015553305::NZ_JADNGJ010000053.1::G00014Context members
I2D66_RS06130I2D66_RS06135
Partner locus tags
I2D66_RS06130I2D66_RS06135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118581446.1Primary protein accession used for annex mappings.
UniProt accessionA0A3R6DM92Primary UniProt accession resolved in the annex database.
UniProt IDA0A3R6DM92_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D66_RS06130Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNGJ010000053.1Sequence record reported by the local genomic context database.
Genomic interval22 218-22 928 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span22 218-23 971 ntGCF_015553305::NZ_JADNGJ010000053.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015553305::NZ_JADNGJ010000053.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNGJ010000053.1All displayed genes belong to this local TCS context.
Neighborhood span22 218-23 971 nt1 754 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 218 nt23 971 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2D66_RS06130GCF_015553305#I2D66_RS06130
RROmpRCurrent focus
22 218-22 928 nt · Forward (+)
I2D66_RS06135GCF_015553305#I2D66_RS06135
HKClassic
22 928-23 971 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003467265#DW914_RS08845Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0995626
Simplified PFAM architecture for RROC_0995626
PFAM domain coverage: 182 / 236 aa (77.1%)
1 aa236 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[17-125] | Trans_reg_C[160-232]
- Domain count: 2
- Matched identifier: RROC_0995626
- Positioned domains: Response_reg 17-125 ; Response_reg 17-125 ; Trans_reg_C 160-232 ; Trans_reg_C 160-232
Cluster members and taxonomy
Representative gene: GCF_003467265#DW914_RS08845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_015553305
AssemblyASM1555330v1 · Contighaploid
Genome composition2 908 332 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 68 · HK 34 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key