1 Response_reg#1
3-103 aa · 101 aa · 46.3% of protein
Raw token
Response_reg:3:4.47e-26:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D66_RS05940
Response regulator NarL family
Dorea longicatena · GCF_015553305
ClassRRTypeNarLLength218 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015553305#I2D66_RS05940Stable P2CS identifier used across views.
GenomeGCF_015553305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 218 aa (70.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
155-206 aa · 52 aa · 23.9% of protein
Raw token
HTH_LUXR:155:1.45e-20:206:52:58- Raw architecture: Response_reg:3:4.47e-26:103:101:111#HTH_LUXR:155:1.45e-20:206:52:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015553305::NZ_JADNGJ010000052.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17935-19754Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015553305::NZ_JADNGJ010000052.1::G00013Context members
I2D66_RS05940I2D66_RS05945
Partner locus tags
I2D66_RS05940I2D66_RS05945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022415645.1Primary protein accession used for annex mappings.
UniProt accessionA0A173V412Primary UniProt accession resolved in the annex database.
UniProt IDA0A173V412_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D66_RS05940Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNGJ010000052.1Sequence record reported by the local genomic context database.
Genomic interval17 935-18 591 nt657 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 935-19 754 ntGCF_015553305::NZ_JADNGJ010000052.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015553305::NZ_JADNGJ010000052.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNGJ010000052.1All displayed genes belong to this local TCS context.
Neighborhood span17 935-19 754 nt1 820 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 935 nt19 754 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2D66_RS05940GCF_015553305#I2D66_RS05940
RRNarLCurrent focus
17 935-18 591 nt · Reverse (-)
I2D66_RS05945GCF_015553305#I2D66_RS05945
HKClassic
18 588-19 754 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405975#AQ988_RS12675Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1815615
Simplified PFAM architecture for RROC_1815615
PFAM domain coverage: 154 / 218 aa (70.6%)
1 aa218 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[155-206]
- Domain count: 2
- Matched identifier: RROC_1815615
- Positioned domains: Response_reg 3-104 ; Response_reg 3-104 ; GerE 155-206 ; GerE 155-206
Cluster members and taxonomy
Representative gene: GCF_001405975#AQ988_RS12675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_015553305
AssemblyASM1555330v1 · Contighaploid
Genome composition2 908 332 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 68 · HK 34 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key