1 Response_reg#1
1-56 aa · 56 aa · 30.6% of protein
Raw token
Response_reg:1:0.00000000000709:56:58:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D66_RS05540
Response regulator LytTR family
Dorea longicatena · GCF_015553305
ClassRRTypeLytTRLength183 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015553305#I2D66_RS05540Stable P2CS identifier used across views.
GenomeGCF_015553305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length183 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage119 / 183 aa (65.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa183 aa
Domain-by-domain annotation2 items
2 LytTR#2
83-145 aa · 63 aa · 34.4% of protein
Raw token
LytTR:83:8.26e-19:145:63:98- Raw architecture: Response_reg:1:0.00000000000709:56:58:111#LytTR:83:8.26e-19:145:63:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015553305::NZ_JADNGJ010000047.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span12811-13362Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015553305::NZ_JADNGJ010000047.1::G00009Context members
I2D66_RS05540
Partner locus tags
I2D66_RS05540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_279327647.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D66_RS05540Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNGJ010000047.1Sequence record reported by the local genomic context database.
Genomic interval12 811-13 362 nt552 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 811-13 362 ntGCF_015553305::NZ_JADNGJ010000047.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015553305::NZ_JADNGJ010000047.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNGJ010000047.1All displayed genes belong to this local TCS context.
Neighborhood span12 811-13 362 nt552 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 811 nt13 362 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2D66_RS05540GCF_015553305#I2D66_RS05540
RRLytTRCurrent focus
12 811-13 362 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015553305#I2D66_RS05540The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2182284
Simplified PFAM architecture for RROC_2182284
PFAM domain coverage: 146 / 183 aa (79.8%)
1 aa183 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-59] | LytTR[83-171]
- Domain count: 2
- Matched identifier: RROC_2182284
- Positioned domains: Response_reg 3-59 ; LytTR 83-171
Cluster members and taxonomy
Representative gene: GCF_015553305#I2D66_RS05540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_015553305
AssemblyASM1555330v1 · Contighaploid
Genome composition2 908 332 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 68 · HK 34 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key