1 HisKA#1
89-158 aa · 70 aa · 22.4% of protein
Raw token
HisKA:89:0.00000000569:158:70:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D66_RS00170
Histidine kinase, Classic
Dorea longicatena · GCF_015553305
ClassHKTypeClassicLength313 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015553305#I2D66_RS00170Stable P2CS identifier used across views.
GenomeGCF_015553305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length313 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 313 aa (57.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa313 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
204-312 aa · 109 aa · 34.8% of protein
Raw token
HATPase_c:204:4.41e-21:312:109:109- Raw architecture: HisKA:89:0.00000000569:158:70:64#HATPase_c:204:4.41e-21:312:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015553305::NZ_JADNGJ010000004.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4621-6264Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015553305::NZ_JADNGJ010000004.1::G00005Context members
I2D66_RS00170I2D66_RS00175
Partner locus tags
I2D66_RS00170I2D66_RS00175
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022416297.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D66_RS00170Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNGJ010000004.1Sequence record reported by the local genomic context database.
Genomic interval4 621-5 562 nt942 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 621-6 264 ntGCF_015553305::NZ_JADNGJ010000004.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015553305::NZ_JADNGJ010000004.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNGJ010000004.1All displayed genes belong to this local TCS context.
Neighborhood span4 621-6 264 nt1 644 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 621 nt6 264 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2D66_RS00170GCF_015553305#I2D66_RS00170
HKClassicCurrent focus
4 621-5 562 nt · Reverse (-)
I2D66_RS00175GCF_015553305#I2D66_RS00175
RROmpR
5 599-6 264 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005844655#FGQ78_RS14920Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2875264
Simplified PFAM architecture for HKOC_2875264
PFAM domain coverage: 177 / 313 aa (56.5%)
1 aa313 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[89-157] | HATPase_c[204-311]
- Domain count: 2
- Matched identifier: HKOC_2875264
- Positioned domains: HisKA 89-157 ; HATPase_c 204-311
Cluster members and taxonomy
Representative gene: GCF_005844655#FGQ78_RS14920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_015553305
AssemblyASM1555330v1 · Contighaploid
Genome composition2 908 332 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 68 · HK 34 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key