1 HAMP#1
154-227 aa · 74 aa · 16.3% of protein
Raw token
HAMP:154:0.00000000000000365:227:74:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2E06_RS08075
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_015553185
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015553185#I2E06_RS08075Stable P2CS identifier used across views.
GenomeGCF_015553185Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage251 / 454 aa (55.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation3 items
2 HisKA#2
233-297 aa · 65 aa · 14.3% of protein
Raw token
HisKA:233:0.0000000000000248:297:65:643 HATPase_c#3
343-454 aa · 112 aa · 24.7% of protein
Raw token
HATPase_c:343:2.8e-28:454:112:109- Raw architecture: HAMP:154:0.00000000000000365:227:74:69#HisKA:233:0.0000000000000248:297:65:64#HATPase_c:343:2.8e-28:454:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015553185::NZ_JADNGF010000013.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51136-53171Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015553185::NZ_JADNGF010000013.1::G00005Context members
I2E06_RS08075I2E06_RS08080
Partner locus tags
I2E06_RS08075I2E06_RS08080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195396650.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2E06_RS08075Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNGF010000013.1Sequence record reported by the local genomic context database.
Genomic interval51 136-52 500 nt1 365 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span51 136-53 171 ntGCF_015553185::NZ_JADNGF010000013.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015553185::NZ_JADNGF010000013.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNGF010000013.1All displayed genes belong to this local TCS context.
Neighborhood span51 136-53 171 nt2 036 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 136 nt53 171 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2E06_RS08075GCF_015553185#I2E06_RS08075
HKClassicCurrent focus
51 136-52 500 nt · Reverse (-)
I2E06_RS08080GCF_015553185#I2E06_RS08080
RROmpR
52 497-53 171 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015553185#I2E06_RS08075The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1917374
Simplified PFAM architecture for HKOC_1917374
PFAM domain coverage: 234 / 454 aa (51.5%)
1 aa454 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[171-227] | HisKA[232-297] | HATPase_c[343-453]
- Domain count: 3
- Matched identifier: HKOC_1917374
- Positioned domains: HAMP 171-227 ; HisKA 232-297 ; HATPase_c 343-453
Cluster members and taxonomy
Representative gene: GCF_015553185#I2E06_RS08075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_015553185
AssemblyASM1555318v1 · Scaffoldhaploid
Genome composition3 373 099 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 80 · HK 38 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key