1 sCache_like#1
68-131 aa · 64 aa · 14.7% of protein
Raw token
sCache_like:68:0.0000000626:131:64:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D84_RS01940
Histidine kinase, Classic
Dorea longicatena · GCF_015552885
ClassHKTypeClassicLength436 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015552885#I2D84_RS01940Stable P2CS identifier used across views.
GenomeGCF_015552885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length436 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 436 aa (55.0%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa436 aa
Domain-by-domain annotation3 items
2 HisKA#2
218-284 aa · 67 aa · 15.4% of protein
Raw token
HisKA:218:9.72e-18:284:67:643 HATPase_c#3
328-436 aa · 109 aa · 25.0% of protein
Raw token
HATPase_c:328:1.96e-25:436:109:109- Raw architecture: sCache_like:68:0.0000000626:131:64:114#HisKA:218:9.72e-18:284:67:64#HATPase_c:328:1.96e-25:436:109:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015552885::NZ_JADNFQ010000005.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41483-43484Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015552885::NZ_JADNFQ010000005.1::G00029Context members
I2D84_RS01940I2D84_RS01945
Partner locus tags
I2D84_RS01940I2D84_RS01945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195389279.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D84_RS01940Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNFQ010000005.1Sequence record reported by the local genomic context database.
Genomic interval41 483-42 793 nt1 311 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span41 483-43 484 ntGCF_015552885::NZ_JADNFQ010000005.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015552885::NZ_JADNFQ010000005.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNFQ010000005.1All displayed genes belong to this local TCS context.
Neighborhood span41 483-43 484 nt2 002 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 483 nt43 484 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2D84_RS01940GCF_015552885#I2D84_RS01940
HKClassicCurrent focus
41 483-42 793 nt · Reverse (-)
I2D84_RS01945GCF_015552885#I2D84_RS01945
RROmpR
42 810-43 484 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015552885#I2D84_RS01940The current gene is the representative for this cluster.
PFAM architecturesCache_like + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2116524
Simplified PFAM architecture for HKOC_2116524
PFAM domain coverage: 235 / 436 aa (53.9%)
1 aa436 aa
sCache_likeHisKAHATPase_c
- Simplified architecture: sCache_like + HisKA + HATPase_c
- Raw architecture: sCache_like[68-131] | HisKA[218-284] | HATPase_c[331-434]
- Domain count: 3
- Matched identifier: HKOC_2116524
- Positioned domains: sCache_like 68-131 ; HisKA 218-284 ; HATPase_c 331-434
Cluster members and taxonomy
Representative gene: GCF_015552885#I2D84_RS01940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_015552885
AssemblyASM1555288v1 · Scaffoldhaploid
Genome composition3 192 614 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 76 · HK 35 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key