1 HAMP#1
307-375 aa · 69 aa · 11.2% of protein
Raw token
HAMP:307:0.00000000701:375:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D79_RS02570
Histidine kinase, Classic
Blautia wexlerae · GCF_015552855
ClassHKTypeClassicLength618 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015552855#I2D79_RS02570Stable P2CS identifier used across views.
GenomeGCF_015552855Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length618 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage251 / 618 aa (40.6%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa618 aa
Domain-by-domain annotation3 items
2 His_kinase#2
392-470 aa · 79 aa · 12.8% of protein
Raw token
His_kinase:392:4.39e-24:470:80:803 HATPase_c#3
489-591 aa · 103 aa · 16.7% of protein
Raw token
HATPase_c:489:0.000000000000666:591:107:109- Raw architecture: HAMP:307:0.00000000701:375:69:69#His_kinase:392:4.39e-24:470:80:80#HATPase_c:489:0.000000000000666:591:107:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015552855::NZ_JADNFN010000003.1::G00037
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span24857-26713Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015552855::NZ_JADNFN010000003.1::G00037Context members
I2D79_RS02570
Partner locus tags
I2D79_RS02570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118613283.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D79_RS02570Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNFN010000003.1Sequence record reported by the local genomic context database.
Genomic interval24 857-26 713 nt1 857 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span24 857-26 713 ntGCF_015552855::NZ_JADNFN010000003.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015552855::NZ_JADNFN010000003.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNFN010000003.1All displayed genes belong to this local TCS context.
Neighborhood span24 857-26 713 nt1 857 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 857 nt26 713 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2D79_RS02570GCF_015552855#I2D79_RS02570
HKClassicCurrent focus
24 857-26 713 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015552855#I2D79_RS02570The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0979591
Simplified PFAM architecture for HKOC_0979591
PFAM domain coverage: 181 / 618 aa (29.3%)
1 aa618 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[393-469] | HATPase_c[489-592]
- Domain count: 2
- Matched identifier: HKOC_0979591
- Positioned domains: His_kinase 393-469 ; HATPase_c 489-592
Cluster members and taxonomy
Representative gene: GCF_015552855#I2D79_RS02570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_015552855
AssemblyASM1555285v1 · Scaffoldhaploid
Genome composition3 884 995 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 116 · HK 54 · RR 58CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key