1 Hpt#1
5-98 aa · 94 aa · 14.2% of protein
Raw token
Hpt:5:1.83e-19:98:94:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D13_RS02520
Histidine kinase, CheA
Clostridium paraputrificum · GCF_015551495
ClassHKTypeCheALength661 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015551495#I2D13_RS02520Stable P2CS identifier used across views.
GenomeGCF_015551495Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length661 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage416 / 661 aa (62.9%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa661 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
289-348 aa · 60 aa · 9.1% of protein
Raw token
H-kinase_dim:289:5.15e-16:348:67:673 HATPase_c#3
396-531 aa · 136 aa · 20.6% of protein
Raw token
HATPase_c:396:0.00000000000000494:531:136:1094 CheW#4
536-661 aa · 126 aa · 19.1% of protein
Raw token
CheW:536:5.15e-27:661:134:138- Raw architecture: Hpt:5:1.83e-19:98:94:84#H-kinase_dim:289:5.15e-16:348:67:67#HATPase_c:396:0.00000000000000494:531:136:109#CheW:536:5.15e-27:661:134:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015551495::NZ_JADNCW010000002.1::G00016
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span83658-85643Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015551495::NZ_JADNCW010000002.1::G00016Context members
I2D13_RS02520
Partner locus tags
I2D13_RS02520
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195343342.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D13_RS02520Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNCW010000002.1Sequence record reported by the local genomic context database.
Genomic interval83 658-85 643 nt1 986 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span83 658-85 643 ntGCF_015551495::NZ_JADNCW010000002.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015551495::NZ_JADNCW010000002.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNCW010000002.1All displayed genes belong to this local TCS context.
Neighborhood span83 658-85 643 nt1 986 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 658 nt85 643 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2D13_RS02520GCF_015551495#I2D13_RS02520
HKCheACurrent focus
83 658-85 643 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015551495#I2D13_RS02520The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0870712
Simplified PFAM architecture for HKOC_0870712
PFAM domain coverage: 491 / 661 aa (74.3%)
1 aa661 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[5-97] | P2[170-246] | H-kinase_dim[289-348] | HATPase_c[397-531] | CheW[536-661]
- Domain count: 5
- Matched identifier: HKOC_0870712
- Positioned domains: Hpt 5-97 ; P2 170-246 ; H-kinase_dim 289-348 ; HATPase_c 397-531 ; CheW 536-661
Cluster members and taxonomy
Representative gene: GCF_015551495#I2D13_RS02520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_015551495
AssemblyASM1555149v1 · Scaffoldhaploid
Genome composition3 748 962 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 72 · HK 38 · RR 32CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key