1 Response_reg#1
49-136 aa · 88 aa · 57.5% of protein
Raw token
Response_reg:49:0.00000000198:136:88:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2C79_RS09805
Response regulator, CheY family
Bifidobacterium longum · GCF_015551415
ClassRRTypeCheYLength153 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015551415#I2C79_RS09805Stable P2CS identifier used across views.
GenomeGCF_015551415Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length153 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage88 / 153 aa (57.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa153 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:49:0.00000000198:136:88:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015551415::NZ_JADNCO010000007.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span115357-115818Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015551415::NZ_JADNCO010000007.1::G00008Context members
I2C79_RS09805
Partner locus tags
I2C79_RS09805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_229033717.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2C79_RS09805Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNCO010000007.1Sequence record reported by the local genomic context database.
Genomic interval115 357-115 818 nt462 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span115 357-115 818 ntGCF_015551415::NZ_JADNCO010000007.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015551415::NZ_JADNCO010000007.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNCO010000007.1All displayed genes belong to this local TCS context.
Neighborhood span115 357-115 818 nt462 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
115 357 nt115 818 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2C79_RS09805GCF_015551415#I2C79_RS09805
RRCheYCurrent focus
115 357-115 818 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015551415#I2C79_RS09805The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2220572
Simplified PFAM architecture for RROC_2220572
PFAM domain coverage: 85 / 153 aa (55.6%)
1 aa153 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[49-133]
- Domain count: 1
- Matched identifier: RROC_2220572
- Positioned domains: Response_reg 49-133
Cluster members and taxonomy
Representative gene: GCF_015551415#I2C79_RS09805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_015551415
AssemblyASM1555141v1 · Scaffoldhaploid
Genome composition2 323 266 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key