1 Response_reg#1
3-104 aa · 102 aa · 44.3% of protein
Raw token
Response_reg:3:0.0000000000000128:104:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RCO55_RS03655
Response regulator LytTR family
Agathobacter rectalis · GCF_015551295
ClassRRTypeLytTRLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015551295#RCO55_RS03655Stable P2CS identifier used across views.
GenomeGCF_015551295Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage193 / 230 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 LytTR#2
132-222 aa · 91 aa · 39.6% of protein
Raw token
LytTR:132:7.96e-18:222:96:98- Raw architecture: Response_reg:3:0.0000000000000128:104:105:111#LytTR:132:7.96e-18:222:96:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015551295::NZ_JADNCL010000003.1::G00035
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span134724-135416Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015551295::NZ_JADNCL010000003.1::G00035Context members
RCO55_RS03655
Partner locus tags
RCO55_RS03655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_306774281.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4UIL5Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4UIL5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRCO55_RS03655Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNCL010000003.1Sequence record reported by the local genomic context database.
Genomic interval134 724-135 416 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span134 724-135 416 ntGCF_015551295::NZ_JADNCL010000003.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015551295::NZ_JADNCL010000003.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNCL010000003.1All displayed genes belong to this local TCS context.
Neighborhood span134 724-135 416 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
134 724 nt135 416 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RCO55_RS03655GCF_015551295#RCO55_RS03655
RRLytTRCurrent focus
134 724-135 416 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015551295#RCO55_RS03655The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1219396
Simplified PFAM architecture for RROC_1219396
PFAM domain coverage: 195 / 230 aa (84.8%)
1 aa230 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-107] | LytTR[132-221]
- Domain count: 2
- Matched identifier: RROC_1219396
- Positioned domains: Response_reg 3-107 ; LytTR 132-221
Cluster members and taxonomy
Representative gene: GCF_015551295#RCO55_RS03655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_015551295
AssemblyASM1555129v1 · Scaffoldhaploid
Genome composition3 465 608 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 92 · HK 39 · RR 50CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key