1 MASE3#1
42-246 aa · 205 aa · 30.5% of protein
Raw token
MASE3:42:0.0000000117:246:225:226P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2B67_RS00830
Histidine kinase, Classic
Clostridium paraputrificum · GCF_015551185
ClassHKTypeClassicLength673 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015551185#I2B67_RS00830Stable P2CS identifier used across views.
GenomeGCF_015551185Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
MASE3HisKAHATPase_c
Protein length673 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage382 / 673 aa (56.8%)Merged over positioned domains only.
Domain description1 MASE3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa673 aa
Domain-by-domain annotation3 items
2 HisKA#2
421-488 aa · 68 aa · 10.1% of protein
Raw token
HisKA:421:0.000000000713:488:68:643 HATPase_c#3
535-643 aa · 109 aa · 16.2% of protein
Raw token
HATPase_c:535:2.28e-22:643:109:109- Raw architecture: MASE3:42:0.0000000117:246:225:226#HisKA:421:0.000000000713:488:68:64#HATPase_c:535:2.28e-22:643:109:109
- Domain description: 1 MASE3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015551185::NZ_JADNCG010000001.1::G00007
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span158633-162548Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015551185::NZ_JADNCG010000001.1::G00007Context members
I2B67_RS00830I2B67_RS00835
Partner locus tags
I2B67_RS00830I2B67_RS00835
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_154840447.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2B67_RS00830Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNCG010000001.1Sequence record reported by the local genomic context database.
Genomic interval158 633-160 654 nt2 022 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span158 633-162 548 ntGCF_015551185::NZ_JADNCG010000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015551185::NZ_JADNCG010000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNCG010000001.1All displayed genes belong to this local TCS context.
Neighborhood span158 633-162 548 nt3 916 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
158 633 nt162 548 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2B67_RS00830GCF_015551185#I2B67_RS00830
HKClassicCurrent focus
158 633-160 654 nt · Reverse (-)
I2B67_RS00835GCF_015551185#I2B67_RS00835
HKClassic
160 659-162 548 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015551185#I2B67_RS00830The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0837285
Simplified PFAM architecture for HKOC_0837285
PFAM domain coverage: 178 / 673 aa (26.4%)
1 aa673 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[421-488] | HATPase_c[535-644]
- Domain count: 2
- Matched identifier: HKOC_0837285
- Positioned domains: HisKA 421-488 ; HATPase_c 535-644
Cluster members and taxonomy
Representative gene: GCF_015551185#I2B67_RS00830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_015551185
AssemblyASM1555118v1 · Scaffoldhaploid
Genome composition3 602 419 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key