1 Response_reg#1
3-97 aa · 95 aa · 90.5% of protein
Raw token
Response_reg:3:6.66e-24:97:95:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2A60_RS05065
Response regulator, CheY family
Coprococcus comes · GCF_015550485
ClassRRTypeCheYLength105 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015550485#I2A60_RS05065Stable P2CS identifier used across views.
GenomeGCF_015550485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length105 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage95 / 105 aa (90.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa105 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:6.66e-24:97:95:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015550485::NZ_JADNAW010000014.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span29594-33020Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015550485::NZ_JADNAW010000014.1::G00008Context members
I2A60_RS05065I2A60_RS05075
Partner locus tags
I2A60_RS05065I2A60_RS05075
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_175305881.1Primary protein accession used for annex mappings.
UniProt accessionA0A849XZR8Primary UniProt accession resolved in the annex database.
UniProt IDA0A849XZR8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2A60_RS05065Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNAW010000014.1Sequence record reported by the local genomic context database.
Genomic interval29 594-29 911 nt318 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span29 594-33 020 ntGCF_015550485::NZ_JADNAW010000014.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015550485::NZ_JADNAW010000014.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNAW010000014.1All displayed genes belong to this local TCS context.
Neighborhood span29 594-33 020 nt3 427 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 594 nt33 020 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2A60_RS05065GCF_015550485#I2A60_RS05065
RRCheYCurrent focus
29 594-29 911 nt · Reverse (-)
I2A60_RS05075GCF_015550485#I2A60_RS05075
HKHybrid
30 162-33 020 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013361125#HUU93_RS10490Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2470483
Simplified PFAM architecture for RROC_2470483
PFAM domain coverage: 96 / 105 aa (91.4%)
1 aa105 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[3-98]
- Domain count: 1
- Matched identifier: RROC_2470483
- Positioned domains: Response_reg 3-98
Cluster members and taxonomy
Representative gene: GCF_013361125#HUU93_RS10490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_015550485
AssemblyASM1555048v1 · Scaffoldhaploid
Genome composition3 231 512 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 81 · HK 41 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key