1 GGDEF#1
136-277 aa · 142 aa · 21.7% of protein
Raw token
GGDEF:136:3.77e-38:277:154:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2A60_RS01345
Response regulator, RpfG family
Coprococcus comes · GCF_015550485
ClassRRTypeRpfGLength654 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015550485#I2A60_RS01345Stable P2CS identifier used across views.
GenomeGCF_015550485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_regHD
Protein length654 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage374 / 654 aa (57.2%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa654 aa
Domain-by-domain annotation3 items
2 Response_reg#2
306-410 aa · 105 aa · 16.1% of protein
Raw token
Response_reg:306:8.96e-29:410:106:1113 HD#3
473-599 aa · 127 aa · 19.4% of protein
Raw token
HD:473:0.0000000000000924:599:127:110- Raw architecture: GGDEF:136:3.77e-38:277:154:160#Response_reg:306:8.96e-29:410:106:111#HD:473:0.0000000000000924:599:127:110
- Domain description: 1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015550485::NZ_JADNAW010000003.1::G00024
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span53675-55639Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015550485::NZ_JADNAW010000003.1::G00024Context members
I2A60_RS01345
Partner locus tags
I2A60_RS01345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195250050.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2A60_RS01345Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNAW010000003.1Sequence record reported by the local genomic context database.
Genomic interval53 675-55 639 nt1 965 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span53 675-55 639 ntGCF_015550485::NZ_JADNAW010000003.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015550485::NZ_JADNAW010000003.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNAW010000003.1All displayed genes belong to this local TCS context.
Neighborhood span53 675-55 639 nt1 965 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 675 nt55 639 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2A60_RS01345GCF_015550485#I2A60_RS01345
RRRpfGCurrent focus
53 675-55 639 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015550485#I2A60_RS01345The current gene is the representative for this cluster.
PFAM architectureGGDEF + Response_reg + HD_53 domains in the representative PFAM annotation.
PFAM architecture for RROC_0035645
Simplified PFAM architecture for RROC_0035645
PFAM domain coverage: 386 / 654 aa (59.0%)
1 aa654 aa
GGDEFResponse_regHD_5
- Simplified architecture: GGDEF + Response_reg + HD_5
- Raw architecture: GGDEF[136-279] | Response_reg[306-417] | HD_5[491-620]
- Domain count: 3
- Matched identifier: RROC_0035645
- Positioned domains: GGDEF 136-279 ; Response_reg 306-417 ; HD_5 491-620
Cluster members and taxonomy
Representative gene: GCF_015550485#I2A60_RS01345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_015550485
AssemblyASM1555048v1 · Scaffoldhaploid
Genome composition3 231 512 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 81 · HK 41 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key