Gene detail

I2A60_RS04530

Histidine kinase, Hybrid

Coprococcus comes · GCF_015550485

Open genome Open selected cluster RefSeq

ClassHKTypeHybridLength715 aaTM0ValidatedNoCompleteYesContextorphan

Gene IDGCF_015550485#I2A60_RS04530Stable P2CS identifier used across views.

GenomeGCF_015550485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus

Selected clusterHKOC_0742963Run 6 · 1 sequences · id 100% · cov 80% · representative

External referencesWP_195250284.1 · MIST4 I2A60_RS04530RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

HisKAHATPase_cResponse_reg

Protein length715 aaLength used to scale native and Biotite-like views.

Annotated domains33 with usable coordinates.

Domain coverage298 / 715 aa (41.7%)Merged over positioned domains only.

Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa715 aa

Domain-by-domain annotation3 items

1 HisKA#1

347-408 aa · 62 aa · 8.7% of protein

Raw tokenHisKA:347:0.0000000488:408:62:64

2 HATPase_c#2

454-578 aa · 125 aa · 17.5% of protein

Raw tokenHATPase_c:454:3.12e-26:578:126:109

3 Response_reg#3

598-708 aa · 111 aa · 15.5% of protein

Raw tokenResponse_reg:598:0.00000000000259:708:114:111

Raw architecture: HisKA:347:0.0000000488:408:62:64#HATPase_c:454:3.12e-26:578:126:109#Response_reg:598:0.00000000000259:708:114:111
Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelorphanGCF_015550485::NZ_JADNAW010000012.1::G00003

Group size11 locus tag listed below.

HK / RR1 / 0Counts resolved for the local TCS neighborhood.

Context span39387-41534Genomic interval covered by the local TCS group.

Identifiers

RefSeq proteinWP_195250284.1

Context group IDGCF_015550485::NZ_JADNAW010000012.1::G00003

Context members

I2A60_RS04530

Partner locus tags

I2A60_RS04530

Partner protein IDs

WP_195250284.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_195250284.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagI2A60_RS04530Primary locus identifier stored in the genes table.

Old locus tagUnavailableNo previous locus tag available for this gene.

Contig / repliconNZ_JADNAW010000012.1Sequence record reported by the local genomic context database.

Genomic interval39 387-41 534 nt2 148 nt · Reverse (-)

StrandReverse (-)Strand sign follows the local context database convention.

Local TCS group span39 387-41 534 ntGCF_015550485::NZ_JADNAW010000012.1::G00003

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_015550485::NZ_JADNAW010000012.1::G00003

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelorphanNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_JADNAW010000012.1All displayed genes belong to this local TCS context.

Neighborhood span39 387-41 534 nt2 148 nt

Members11 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

39 387 nt41 534 nt

+-I2A60_RS04530

Neighborhood gene cards

1 gene in the current local neighborhood.

I2A60_RS04530GCF_015550485#I2A60_RS04530

HKHybridCurrent focus

39 387-41 534 nt · Reverse (-)

RefSeq WP_195250284.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_0742963HK

Run 61 sequencesid 100%cov 80%

PFAM sCache_2 + HisKA + HATPase_c + Response_reg

Current gene is the representative sequence.

Selected clusterHKOC_0742963Run 6 · HK · 1 sequences

Representative sequenceGCF_015550485#I2A60_RS04530The current gene is the representative for this cluster.

PFAM architecturesCache_2 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.

Open in cluster search

PFAM architecture for HKOC_0742963

Simplified PFAM architecture for HKOC_0742963

PFAM domain coverage: 419 / 715 aa (58.6%)

1 aa715 aa

sCache_2HisKAHATPase_cResponse_reg

Simplified architecture: sCache_2 + HisKA + HATPase_c + Response_reg
Raw architecture: sCache_2[160-281] | HisKA[348-409] | HATPase_c[455-578] | Response_reg[598-708]
Domain count: 4
Matched identifier: HKOC_0742963
Positioned domains: sCache_2 160-281 ; HisKA 348-409 ; HATPase_c 455-578 ; Response_reg 598-708

Cluster members and taxonomy

Representative gene: GCF_015550485#I2A60_RS04530

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 410 072 · GCF_015550485

AssemblyASM1555048v1 · Scaffoldhaploid

Genome composition3 231 512 bp · 42,5% GCCoprococcus comes

Signal transduction countsGenes 81 · HK 41 · RR 39CheA 0 · PP 1

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus

Open genome Search genes in genome Search HK genes NCBI assembly files

Related genes

Preview from the same derived genome key