1 Response_reg#1
5-112 aa · 108 aa · 48.2% of protein
Raw token
Response_reg:5:6.5e-36:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2A60_RS03585
Response regulator OmpR family
Coprococcus comes · GCF_015550485
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015550485#I2A60_RS03585Stable P2CS identifier used across views.
GenomeGCF_015550485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 224 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-222 aa · 75 aa · 33.5% of protein
Raw token
Trans_reg_C:148:2.62e-24:222:76:77- Raw architecture: Response_reg:5:6.5e-36:112:110:111#Trans_reg_C:148:2.62e-24:222:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015550485::NZ_JADNAW010000009.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25925-27789Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015550485::NZ_JADNAW010000009.1::G00045Context members
I2A60_RS03585I2A60_RS03590
Partner locus tags
I2A60_RS03585I2A60_RS03590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_023921570.1Primary protein accession used for annex mappings.
UniProt accessionA0A2V1JV37Primary UniProt accession resolved in the annex database.
UniProt IDA0A2V1JV37_EUBRADisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2A60_RS03585Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNAW010000009.1Sequence record reported by the local genomic context database.
Genomic interval25 925-26 599 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span25 925-27 789 ntGCF_015550485::NZ_JADNAW010000009.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015550485::NZ_JADNAW010000009.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNAW010000009.1All displayed genes belong to this local TCS context.
Neighborhood span25 925-27 789 nt1 865 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 925 nt27 789 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2A60_RS03585GCF_015550485#I2A60_RS03585
RROmpRCurrent focus
25 925-26 599 nt · Forward (+)
I2A60_RS03590GCF_015550485#I2A60_RS03590
HKClassic
26 587-27 789 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169235#DORFOR_RS08785Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1529303
Simplified PFAM architecture for RROC_1529303
PFAM domain coverage: 182 / 224 aa (81.3%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1529303
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_000169235#DORFOR_RS08785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_015550485
AssemblyASM1555048v1 · Scaffoldhaploid
Genome composition3 231 512 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 81 · HK 41 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key