1 Response_reg#1
67-180 aa · 114 aa · 60.3% of protein
Raw token
Response_reg:67:1.91e-28:180:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2A60_RS02130
Response regulator, unclassified
Coprococcus comes · GCF_015550485
ClassRRTypeunclassifiedLength189 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_015550485#I2A60_RS02130Stable P2CS identifier used across views.
GenomeGCF_015550485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length189 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage114 / 189 aa (60.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa189 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:67:1.91e-28:180:114:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_015550485::NZ_JADNAW010000005.1::G00032
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span17339-23189Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015550485::NZ_JADNAW010000005.1::G00032Context members
I2A60_RS02125I2A60_RS02130I2A60_RS02135
Partner locus tags
I2A60_RS02125I2A60_RS02130I2A60_RS02135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330614053.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2A60_RS02130Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNAW010000005.1Sequence record reported by the local genomic context database.
Genomic interval19 716-20 285 nt570 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span17 339-23 189 ntGCF_015550485::NZ_JADNAW010000005.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015550485::NZ_JADNAW010000005.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNAW010000005.1All displayed genes belong to this local TCS context.
Neighborhood span17 339-23 189 nt5 851 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 339 nt23 189 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
I2A60_RS02125GCF_015550485#I2A60_RS02125
HKHybrid
17 339-19 495 nt · Forward (+)
I2A60_RS02130GCF_015550485#I2A60_RS02130
RRunclassifiedCurrent focus
19 716-20 285 nt · Forward (+)
I2A60_RS02135GCF_015550485#I2A60_RS02135
HKHybrid
20 322-23 189 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015550485#I2A60_RS02130The current gene is the representative for this cluster.
PFAM architectureHATPase_c + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2172595
Simplified PFAM architecture for RROC_2172595
PFAM domain coverage: 153 / 189 aa (81.0%)
1 aa189 aa
HATPase_cResponse_reg
- Simplified architecture: HATPase_c + Response_reg
- Raw architecture: HATPase_c[2-40] | Response_reg[67-180]
- Domain count: 2
- Matched identifier: RROC_2172595
- Positioned domains: HATPase_c 2-40 ; Response_reg 67-180
Cluster members and taxonomy
Representative gene: GCF_015550485#I2A60_RS02130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_015550485
AssemblyASM1555048v1 · Scaffoldhaploid
Genome composition3 231 512 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 81 · HK 41 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key