1 Response_reg#1
46-124 aa · 79 aa · 32.0% of protein
Raw token
Response_reg:46:0.000000139:124:86:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2B59_RS06445
Response regulator LytTR family
Blautia massiliensis (ex Durand et al. 2017) · GCF_015549855
ClassRRTypeLytTRLength247 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015549855#I2B59_RS06445Stable P2CS identifier used across views.
GenomeGCF_015549855Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length247 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 247 aa (64.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa247 aa
Domain-by-domain annotation2 items
2 LytTR#2
157-237 aa · 81 aa · 32.8% of protein
Raw token
LytTR:157:0.000000000000002:237:87:98- Raw architecture: Response_reg:46:0.000000139:124:86:111#LytTR:157:0.000000000000002:237:87:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015549855::NZ_JADMZR010000006.1::G00035
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span17507-18250Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015549855::NZ_JADMZR010000006.1::G00035Context members
I2B59_RS06445
Partner locus tags
I2B59_RS06445
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_110925735.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2B59_RS06445Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMZR010000006.1Sequence record reported by the local genomic context database.
Genomic interval17 507-18 250 nt744 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 507-18 250 ntGCF_015549855::NZ_JADMZR010000006.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015549855::NZ_JADMZR010000006.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMZR010000006.1All displayed genes belong to this local TCS context.
Neighborhood span17 507-18 250 nt744 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 507 nt18 250 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2B59_RS06445GCF_015549855#I2B59_RS06445
RRLytTRCurrent focus
17 507-18 250 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015549855#I2B59_RS06445The current gene is the representative for this cluster.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0761753
Simplified PFAM architecture for RROC_0761753
PFAM domain coverage: 90 / 247 aa (36.4%)
1 aa247 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[146-235]
- Domain count: 1
- Matched identifier: RROC_0761753
- Positioned domains: LytTR 146-235
Cluster members and taxonomy
Representative gene: GCF_015549855#I2B59_RS06445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_015549855
AssemblyASM1554985v1 · Scaffoldhaploid
Genome composition3 394 619 bp · 44,0% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 81 · HK 40 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key