1 Response_reg#1
5-104 aa · 100 aa · 52.4% of protein
Raw token
Response_reg:5:2.6e-31:104:100:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ITJ17_RS08325
Response regulator, AmiR_NasR family
Clostridioides difficile · GCF_015352315
ClassRRTypeAmiR_NasRLength191 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015352315#ITJ17_RS08325Stable P2CS identifier used across views.
GenomeGCF_015352315Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length191 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 191 aa (78.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa191 aa
Domain-by-domain annotation2 items
2 ANTAR#2
138-186 aa · 49 aa · 25.7% of protein
Raw token
ANTAR:138:3.01e-20:186:49:49- Raw architecture: Response_reg:5:2.6e-31:104:100:111#ANTAR:138:3.01e-20:186:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015352315::NZ_JADKQZ010000024.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span37176-39153Genomic interval covered by the local TCS group.
Identifiers
Old locus tagITJ17_08320RefSeq proteinWP_003423977.1
Context group ID
GCF_015352315::NZ_JADKQZ010000024.1::G00019Context members
ITJ17_RS08320ITJ17_RS08325
Partner locus tags
ITJ17_RS08320ITJ17_RS08325
Partner old locus tags
ITJ17_08315ITJ17_08320
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003423977.1Primary protein accession used for annex mappings.
UniProt accessionD5Q483Primary UniProt accession resolved in the annex database.
UniProt IDD5Q483_CLODIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagITJ17_RS08325Primary locus identifier stored in the genes table.
Old locus tagITJ17_08320Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JADKQZ010000024.1Sequence record reported by the local genomic context database.
Genomic interval38 578-39 153 nt576 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span37 176-39 153 ntGCF_015352315::NZ_JADKQZ010000024.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015352315::NZ_JADKQZ010000024.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADKQZ010000024.1All displayed genes belong to this local TCS context.
Neighborhood span37 176-39 153 nt1 978 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 176 nt39 153 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ITJ17_RS08320GCF_015352315#ITJ17_RS08320
HKClassic
37 176-38 585 nt · Reverse (-)
ITJ17_RS08325GCF_015352315#ITJ17_RS08325
RRAmiR_NasRCurrent focus
38 578-39 153 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030251125#QQO88_RS01710Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2128965
Simplified PFAM architecture for RROC_2128965
PFAM domain coverage: 164 / 201 aa (81.6%)
1 aa201 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[15-125] | ANTAR[144-196]
- Domain count: 2
- Matched identifier: RROC_2128965
- Positioned domains: Response_reg 15-125 ; ANTAR 144-196
Cluster members and taxonomy
Representative gene: GCF_030251125#QQO88_RS01710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_015352315
AssemblyASM1535231v1 · Scaffoldhaploid
Genome composition4 172 909 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key