1 HisKA#1
199-258 aa · 60 aa · 14.4% of protein
Raw token
HisKA:199:0.000000000733:258:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ITJ05_RS09940
Histidine kinase, Classic
Clostridioides difficile · GCF_015352255
ClassHKTypeClassicLength417 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015352255#ITJ05_RS09940Stable P2CS identifier used across views.
GenomeGCF_015352255Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length417 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 417 aa (40.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa417 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
304-410 aa · 107 aa · 25.7% of protein
Raw token
HATPase_c:304:4.13e-22:410:107:109- Raw architecture: HisKA:199:0.000000000733:258:60:64#HATPase_c:304:4.13e-22:410:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015352255::NZ_JADKQU010000022.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span38836-40792Genomic interval covered by the local TCS group.
Identifiers
Old locus tagITJ05_09940RefSeq proteinWP_003419909.1
Context group ID
GCF_015352255::NZ_JADKQU010000022.1::G00014Context members
ITJ05_RS09935ITJ05_RS09940
Partner locus tags
ITJ05_RS09935ITJ05_RS09940
Partner old locus tags
ITJ05_09935ITJ05_09940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003419909.1Primary protein accession used for annex mappings.
UniProt accessionD5Q6B8Primary UniProt accession resolved in the annex database.
UniProt IDD5Q6B8_CLODIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagITJ05_RS09940Primary locus identifier stored in the genes table.
Old locus tagITJ05_09940Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JADKQU010000022.1Sequence record reported by the local genomic context database.
Genomic interval39 539-40 792 nt1 254 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span38 836-40 792 ntGCF_015352255::NZ_JADKQU010000022.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015352255::NZ_JADKQU010000022.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADKQU010000022.1All displayed genes belong to this local TCS context.
Neighborhood span38 836-40 792 nt1 957 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
38 836 nt40 792 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ITJ05_RS09935GCF_015352255#ITJ05_RS09935
RROmpR
38 836-39 561 nt · Forward (+)
ITJ05_RS09940GCF_015352255#ITJ05_RS09940
HKClassicCurrent focus
39 539-40 792 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0207205Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2293474
Simplified PFAM architecture for HKOC_2293474
PFAM domain coverage: 169 / 417 aa (40.5%)
1 aa417 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[196-258] | HATPase_c[305-410]
- Domain count: 2
- Matched identifier: HKOC_2293474
- Positioned domains: HisKA 196-258 ; HATPase_c 305-410
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0207205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_015352255
AssemblyASM1535225v1 · Scaffoldhaploid
Genome composition3 912 632 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 48 · RR 47CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key