1 HisKA_3#1
124-189 aa · 66 aa · 20.4% of protein
Raw token
HisKA_3:124:4.33e-21:189:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ITJ05_RS00005
Histidine kinase, Classic
Clostridioides difficile · GCF_015352255
ClassHKTypeClassicLength323 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015352255#ITJ05_RS00005Stable P2CS identifier used across views.
GenomeGCF_015352255Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length323 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 323 aa (46.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa323 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
230-314 aa · 85 aa · 26.3% of protein
Raw token
HATPase_c:230:0.000000000989:314:104:109- Raw architecture: HisKA_3:124:4.33e-21:189:67:68#HATPase_c:230:0.000000000989:314:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015352255::NZ_JADKQU010000001.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-1614Genomic interval covered by the local TCS group.
Identifiers
Old locus tagITJ05_00005RefSeq proteinWP_194632705.1
Context group ID
GCF_015352255::NZ_JADKQU010000001.1::G00007Context members
ITJ05_RS00005ITJ05_RS00010
Partner locus tags
ITJ05_RS00005ITJ05_RS00010
Partner old locus tags
ITJ05_00005ITJ05_00010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_194632705.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagITJ05_RS00005Primary locus identifier stored in the genes table.
Old locus tagITJ05_00005Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JADKQU010000001.1Sequence record reported by the local genomic context database.
Genomic interval1-974 nt974 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 614 ntGCF_015352255::NZ_JADKQU010000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015352255::NZ_JADKQU010000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADKQU010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 614 nt1 614 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 614 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ITJ05_RS00005GCF_015352255#ITJ05_RS00005
HKClassicCurrent focus
1-974 nt · Forward (+)
ITJ05_RS00010GCF_015352255#ITJ05_RS00010
RRNarL
967-1 614 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0206215Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2550121
Simplified PFAM architecture for HKOC_2550121
PFAM domain coverage: 150 / 387 aa (38.8%)
1 aa387 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[188-252] | HATPase_c[294-378]
- Domain count: 2
- Matched identifier: HKOC_2550121
- Positioned domains: HisKA_3 188-252 ; HATPase_c 294-378
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0206215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_015352255
AssemblyASM1535225v1 · Scaffoldhaploid
Genome composition3 912 632 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 48 · RR 47CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key