1 Response_reg#1
5-108 aa · 104 aa · 45.2% of protein
Raw token
Response_reg:5:0.000000104:108:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Fi14EGH31_RS13295
Response regulator LytTR family
Faecalibacillus intestinalis · GCF_015097455
ClassRRTypeLytTRLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015097455#Fi14EGH31_RS13295Stable P2CS identifier used across views.
GenomeGCF_015097455Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 230 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-220 aa · 83 aa · 36.1% of protein
Raw token
LytTR:138:0.000000000000324:220:88:98- Raw architecture: Response_reg:5:0.000000104:108:109:111#LytTR:138:0.000000000000324:220:88:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015097455::NZ_AP024085.1::G00031
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2497627-2498319Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFi14EGH31_25640RefSeq proteinWP_022001998.1
Context group ID
GCF_015097455::NZ_AP024085.1::G00031Context members
Fi14EGH31_RS13295
Partner locus tags
Fi14EGH31_RS13295
Partner old locus tags
Fi14EGH31_25640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022001998.1Primary protein accession used for annex mappings.
UniProt accessionA0A7I8E1P3Primary UniProt accession resolved in the annex database.
UniProt IDA0A7I8E1P3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFi14EGH31_RS13295Primary locus identifier stored in the genes table.
Old locus tagFi14EGH31_25640Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP024085.1Sequence record reported by the local genomic context database.
Genomic interval2 497 627-2 498 319 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 497 627-2 498 319 ntGCF_015097455::NZ_AP024085.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015097455::NZ_AP024085.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP024085.1All displayed genes belong to this local TCS context.
Neighborhood span2 497 627-2 498 319 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 497 627 nt2 498 319 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
Fi14EGH31_RS13295GCF_015097455#Fi14EGH31_RS13295
RRLytTRCurrent focus
2 497 627-2 498 319 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015097455#Fi14EGH31_RS13295The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1219195
Simplified PFAM architecture for RROC_1219195
PFAM domain coverage: 186 / 230 aa (80.9%)
1 aa230 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-104] | LytTR[137-220]
- Domain count: 2
- Matched identifier: RROC_1219195
- Positioned domains: Response_reg 3-104 ; LytTR 137-220
Cluster members and taxonomy
Representative gene: GCF_015097455#Fi14EGH31_RS13295
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_015097455
AssemblyASM1509745v1 · Complete Genomereference genome · haploid
Genome composition2 869 982 bp · 30,0% GCFaecalibacillus intestinalis
Signal transduction countsGenes 57 · HK 20 · RR 36CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key