1 GGDEF#1
113-256 aa · 144 aa · 34.8% of protein
Raw token
GGDEF:113:6.08e-41:256:156:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Fi14EGH31_RS05720
Response regulator, PleD family
Faecalibacillus intestinalis · GCF_015097455
ClassRRTypePleDLength414 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015097455#Fi14EGH31_RS05720Stable P2CS identifier used across views.
GenomeGCF_015097455Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_reg
Protein length414 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage249 / 414 aa (60.1%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa414 aa
Domain-by-domain annotation2 items
2 Response_reg#2
278-382 aa · 105 aa · 25.4% of protein
Raw token
Response_reg:278:3.74e-23:382:106:111- Raw architecture: GGDEF:113:6.08e-41:256:156:160#Response_reg:278:3.74e-23:382:106:111
- Domain description: 1 GGDEF,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015097455::NZ_AP024085.1::G00015
Group size22 locus tags listed below.
HK / RR0 / 2Counts resolved for the local TCS neighborhood.
Context span1089069-1090695Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFi14EGH31_10830RefSeq proteinWP_107030643.1
Context group ID
GCF_015097455::NZ_AP024085.1::G00015Context members
Fi14EGH31_RS05715Fi14EGH31_RS05720
Partner locus tags
Fi14EGH31_RS05715Fi14EGH31_RS05720
Partner old locus tags
Fi14EGH31_10820Fi14EGH31_10830
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_107030643.1Primary protein accession used for annex mappings.
UniProt accessionA0A2T3FK80Primary UniProt accession resolved in the annex database.
UniProt IDA0A2T3FK80_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFi14EGH31_RS05720Primary locus identifier stored in the genes table.
Old locus tagFi14EGH31_10830Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP024085.1Sequence record reported by the local genomic context database.
Genomic interval1 089 451-1 090 695 nt1 245 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 089 069-1 090 695 ntGCF_015097455::NZ_AP024085.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015097455::NZ_AP024085.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP024085.1All displayed genes belong to this local TCS context.
Neighborhood span1 089 069-1 090 695 nt1 627 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 089 069 nt1 090 695 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Fi14EGH31_RS05715GCF_015097455#Fi14EGH31_RS05715
RRCheY
1 089 069-1 089 326 nt · Forward (+)
Fi14EGH31_RS05720GCF_015097455#Fi14EGH31_RS05720
RRPleDCurrent focus
1 089 451-1 090 695 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003024685#C7U54_RS13775Use this link to inspect the representative gene detail.
PFAM architectureGGDEF + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0364128
Simplified PFAM architecture for RROC_0364128
PFAM domain coverage: 251 / 414 aa (60.6%)
1 aa414 aa
GGDEFResponse_reg
- Simplified architecture: GGDEF + Response_reg
- Raw architecture: GGDEF[113-256] | Response_reg[278-384]
- Domain count: 2
- Matched identifier: RROC_0364128
- Positioned domains: GGDEF 113-256 ; GGDEF 113-256 ; Response_reg 278-384 ; Response_reg 278-384
Cluster members and taxonomy
Representative gene: GCF_003024685#C7U54_RS13775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_015097455
AssemblyASM1509745v1 · Complete Genomereference genome · haploid
Genome composition2 869 982 bp · 30,0% GCFaecalibacillus intestinalis
Signal transduction countsGenes 57 · HK 20 · RR 36CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key