1 Response_reg#1
5-113 aa · 109 aa · 47.6% of protein
Raw token
Response_reg:5:1.9e-32:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Fi14EGH31_RS03445
Response regulator OmpR family
Faecalibacillus intestinalis · GCF_015097455
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015097455#Fi14EGH31_RS03445Stable P2CS identifier used across views.
GenomeGCF_015097455Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 229 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-226 aa · 75 aa · 32.8% of protein
Raw token
Trans_reg_C:152:1.54e-28:226:75:77- Raw architecture: Response_reg:5:1.9e-32:113:111:111#Trans_reg_C:152:1.54e-28:226:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015097455::NZ_AP024085.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span665163-665852Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFi14EGH31_06410RefSeq proteinWP_117481185.1
Context group ID
GCF_015097455::NZ_AP024085.1::G00008Context members
Fi14EGH31_RS03445
Partner locus tags
Fi14EGH31_RS03445
Partner old locus tags
Fi14EGH31_06410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117481185.1Primary protein accession used for annex mappings.
UniProt accessionA0A7I8DWC4Primary UniProt accession resolved in the annex database.
UniProt IDA0A7I8DWC4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFi14EGH31_RS03445Primary locus identifier stored in the genes table.
Old locus tagFi14EGH31_06410Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP024085.1Sequence record reported by the local genomic context database.
Genomic interval665 163-665 852 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span665 163-665 852 ntGCF_015097455::NZ_AP024085.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015097455::NZ_AP024085.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP024085.1All displayed genes belong to this local TCS context.
Neighborhood span665 163-665 852 nt690 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
665 163 nt665 852 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
Fi14EGH31_RS03445GCF_015097455#Fi14EGH31_RS03445
RROmpRCurrent focus
665 163-665 852 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015097455#Fi14EGH31_RS03445The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1270519
Simplified PFAM architecture for RROC_1270519
PFAM domain coverage: 184 / 229 aa (80.3%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1270519
- Positioned domains: Response_reg 5-112 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_015097455#Fi14EGH31_RS03445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_015097455
AssemblyASM1509745v1 · Complete Genomereference genome · haploid
Genome composition2 869 982 bp · 30,0% GCFaecalibacillus intestinalis
Signal transduction countsGenes 57 · HK 20 · RR 36CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key