1 HisKA#1
317-377 aa · 61 aa · 11.7% of protein
Raw token
HisKA:317:0.000000000000278:377:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Fi14EGH31_RS00720
Histidine kinase, Classic
Faecalibacillus intestinalis · GCF_015097455
ClassHKTypeClassicLength522 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015097455#Fi14EGH31_RS00720Stable P2CS identifier used across views.
GenomeGCF_015097455Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length522 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 522 aa (29.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa522 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
422-513 aa · 92 aa · 17.6% of protein
Raw token
HATPase_c:422:0.0000000000000521:513:97:109- Raw architecture: HisKA:317:0.000000000000278:377:61:64#HATPase_c:422:0.0000000000000521:513:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015097455::NZ_AP024085.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span130891-133120Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFi14EGH31_01410RefSeq proteinWP_117788574.1
Context group ID
GCF_015097455::NZ_AP024085.1::G00001Context members
Fi14EGH31_RS00715Fi14EGH31_RS00720
Partner locus tags
Fi14EGH31_RS00715Fi14EGH31_RS00720
Partner old locus tags
Fi14EGH31_01400Fi14EGH31_01410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117788574.1Primary protein accession used for annex mappings.
UniProt accessionA0A7I8DV04Primary UniProt accession resolved in the annex database.
UniProt IDA0A7I8DV04_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFi14EGH31_RS00720Primary locus identifier stored in the genes table.
Old locus tagFi14EGH31_01410Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP024085.1Sequence record reported by the local genomic context database.
Genomic interval131 552-133 120 nt1 569 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span130 891-133 120 ntGCF_015097455::NZ_AP024085.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015097455::NZ_AP024085.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP024085.1All displayed genes belong to this local TCS context.
Neighborhood span130 891-133 120 nt2 230 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
130 891 nt133 120 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Fi14EGH31_RS00715GCF_015097455#Fi14EGH31_RS00715
RROmpR
130 891-131 559 nt · Forward (+)
Fi14EGH31_RS00720GCF_015097455#Fi14EGH31_RS00720
HKClassicCurrent focus
131 552-133 120 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015097455#Fi14EGH31_RS00720The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1385300
Simplified PFAM architecture for HKOC_1385300
PFAM domain coverage: 154 / 522 aa (29.5%)
1 aa522 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[317-378] | HATPase_c[422-513]
- Domain count: 2
- Matched identifier: HKOC_1385300
- Positioned domains: HisKA 317-378 ; HATPase_c 422-513
Cluster members and taxonomy
Representative gene: GCF_015097455#Fi14EGH31_RS00720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_015097455
AssemblyASM1509745v1 · Complete Genomereference genome · haploid
Genome composition2 869 982 bp · 30,0% GCFaecalibacillus intestinalis
Signal transduction countsGenes 57 · HK 20 · RR 36CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key