1 Response_reg#1
4-118 aa · 115 aa · 48.7% of protein
Raw token
Response_reg:4:0.000000102:118:123:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H9L42_RS03225
Response regulator LytTR family
Zhenpiania hominis · GCF_014333425
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_014333425#H9L42_RS03225Stable P2CS identifier used across views.
GenomeGCF_014333425Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriales Family XIII. Incertae Sedis; Zhenpiania
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage203 / 236 aa (86.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
142-229 aa · 88 aa · 37.3% of protein
Raw token
LytTR:142:1.79e-19:229:96:98- Raw architecture: Response_reg:4:0.000000102:118:123:111#LytTR:142:1.79e-19:229:96:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_014333425::NZ_JACRYT010000002.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span87760-88470Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH9L42_03225RefSeq proteinWP_187302012.1
Context group ID
GCF_014333425::NZ_JACRYT010000002.1::G00009Context members
H9L42_RS03225
Partner locus tags
H9L42_RS03225
Partner old locus tags
H9L42_03225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_187302012.1Primary protein accession used for annex mappings.
UniProt accessionA0A923SPR4Primary UniProt accession resolved in the annex database.
UniProt IDA0A923SPR4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH9L42_RS03225Primary locus identifier stored in the genes table.
Old locus tagH9L42_03225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACRYT010000002.1Sequence record reported by the local genomic context database.
Genomic interval87 760-88 470 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span87 760-88 470 ntGCF_014333425::NZ_JACRYT010000002.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014333425::NZ_JACRYT010000002.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACRYT010000002.1All displayed genes belong to this local TCS context.
Neighborhood span87 760-88 470 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
87 760 nt88 470 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
H9L42_RS03225GCF_014333425#H9L42_RS03225
RRLytTRCurrent focus
87 760-88 470 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_014333425#H9L42_RS03225The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0999894
Simplified PFAM architecture for RROC_0999894
PFAM domain coverage: 202 / 236 aa (85.6%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-118] | LytTR[141-227]
- Domain count: 2
- Matched identifier: RROC_0999894
- Positioned domains: Response_reg 4-118 ; LytTR 141-227
Cluster members and taxonomy
Representative gene: GCF_014333425#H9L42_RS03225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 644 · GCF_014333425
AssemblyASM1433342v1 · Contigreference genome · haploid
Genome composition3 442 329 bp · 47,0% GCZhenpiania hominis
Signal transduction countsGenes 64 · HK 30 · RR 33CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriales Family XIII. Incertae SedisGenusZhenpiania
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriales Family XIII. Incertae Sedis7Zhenpiania
Related genes
Preview from the same derived genome key