1 Response_reg#1
3-110 aa · 108 aa · 45.2% of protein
Raw token
Response_reg:3:5.8e-19:110:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S01_RS03480
Response regulator LytTR family
Lachnospira hominis (ex Liu et al. 2021) · GCF_014287955
ClassRRTypeLytTRLength239 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_014287955#H8S01_RS03480Stable P2CS identifier used across views.
GenomeGCF_014287955Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage201 / 239 aa (84.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
138-230 aa · 93 aa · 38.9% of protein
Raw token
LytTR:138:5.47e-17:230:98:98- Raw architecture: Response_reg:3:5.8e-19:110:112:111#LytTR:138:5.47e-17:230:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_014287955::NZ_JACOPD010000002.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span192191-192910Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S01_03480RefSeq proteinWP_021865959.1
Context group ID
GCF_014287955::NZ_JACOPD010000002.1::G00008Context members
H8S01_RS03480
Partner locus tags
H8S01_RS03480
Partner old locus tags
H8S01_03480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021865959.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FXW9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FXW9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S01_RS03480Primary locus identifier stored in the genes table.
Old locus tagH8S01_03480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOPD010000002.1Sequence record reported by the local genomic context database.
Genomic interval192 191-192 910 nt720 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span192 191-192 910 ntGCF_014287955::NZ_JACOPD010000002.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014287955::NZ_JACOPD010000002.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOPD010000002.1All displayed genes belong to this local TCS context.
Neighborhood span192 191-192 910 nt720 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
192 191 nt192 910 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
H8S01_RS03480GCF_014287955#H8S01_RS03480
RRLytTRCurrent focus
192 191-192 910 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_014287955#H8S01_RS03480The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0917082
Simplified PFAM architecture for RROC_0917082
PFAM domain coverage: 201 / 239 aa (84.1%)
1 aa239 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-112] | LytTR[140-230]
- Domain count: 2
- Matched identifier: RROC_0917082
- Positioned domains: Response_reg 3-112 ; LytTR 140-230
Cluster members and taxonomy
Representative gene: GCF_014287955#H8S01_RS03480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 051 · GCF_014287955
AssemblyASM1428795v1 · Contighaploid
Genome composition2 936 761 bp · 36,5% GCLachnospira hominis (ex Liu et al. 2021)
Signal transduction countsGenes 40 · HK 16 · RR 24CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnospira
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnospira
Related genes
Preview from the same derived genome key