1 SBP_bac_3#1
53-247 aa · 195 aa · 20.8% of protein
Raw token
SBP_bac_3:53:1.23e-18:247:208:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S76_RS05900
Histidine kinase, Hybrid
Blautia celeris · GCF_014287615
ClassHKTypeHybridLength939 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_014287615#H8S76_RS05900Stable P2CS identifier used across views.
GenomeGCF_014287615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length939 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage698 / 939 aa (74.3%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa939 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
287-488 aa · 202 aa · 21.5% of protein
Raw token
SBP_bac_3:287:0.00000000000000639:488:215:2243 HisKA#3
560-626 aa · 67 aa · 7.1% of protein
Raw token
HisKA:560:2.87e-18:626:67:644 HATPase_c#4
672-787 aa · 116 aa · 12.4% of protein
Raw token
HATPase_c:672:8.3e-31:787:116:1095 Response_reg#5
812-929 aa · 118 aa · 12.6% of protein
Raw token
Response_reg:812:1.75e-27:929:118:111- Raw architecture: SBP_bac_3:53:1.23e-18:247:208:224#SBP_bac_3:287:0.00000000000000639:488:215:224#HisKA:560:2.87e-18:626:67:64#HATPase_c:672:8.3e-31:787:116:109#Response_reg:812:1.75e-27:929:118:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_014287615::NZ_JACOOU010000002.1::G00038
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span272776-275595Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S76_05900RefSeq proteinWP_103731766.1
Context group ID
GCF_014287615::NZ_JACOOU010000002.1::G00038Context members
H8S76_RS05900
Partner locus tags
H8S76_RS05900
Partner old locus tags
H8S76_05900
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_103731766.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7F974Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7F974_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S76_RS05900Primary locus identifier stored in the genes table.
Old locus tagH8S76_05900Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOOU010000002.1Sequence record reported by the local genomic context database.
Genomic interval272 776-275 595 nt2 820 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span272 776-275 595 ntGCF_014287615::NZ_JACOOU010000002.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014287615::NZ_JACOOU010000002.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOOU010000002.1All displayed genes belong to this local TCS context.
Neighborhood span272 776-275 595 nt2 820 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
272 776 nt275 595 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
H8S76_RS05900GCF_014287615#H8S76_RS05900
HKHybridCurrent focus
272 776-275 595 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS01600Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0341405
Simplified PFAM architecture for HKOC_0341405
PFAM domain coverage: 697 / 939 aa (74.2%)
1 aa939 aa
SBP_bac_3SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[53-249] | SBP_bac_3[289-489] | HisKA[560-626] | HATPase_c[672-786] | Response_reg[812-928]
- Domain count: 5
- Matched identifier: HKOC_0341405
- Positioned domains: SBP_bac_3 53-249 ; SBP_bac_3 289-489 ; HisKA 560-626 ; HATPase_c 672-786 ; Response_reg 812-928
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS01600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 026 · GCF_014287615
AssemblyASM1428761v1 · Contigreference genome · haploid
Genome composition6 189 697 bp · 46,5% GCBlautia celeris
Signal transduction countsGenes 263 · HK 136 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key