1 SBP_bac_3#1
53-247 aa · 195 aa · 20.8% of protein
Raw token
SBP_bac_3:53:1.23e-18:247:208:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA40_RS01600
Histidine kinase, Hybrid
Blautia sp. OF01-4LB · GCF_003478165
ClassHKTypeHybridLength939 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003478165#DXA40_RS01600Stable P2CS identifier used across views.
GenomeGCF_003478165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length939 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage698 / 939 aa (74.3%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa939 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
287-488 aa · 202 aa · 21.5% of protein
Raw token
SBP_bac_3:287:0.00000000000000639:488:215:2243 HisKA#3
560-626 aa · 67 aa · 7.1% of protein
Raw token
HisKA:560:2.87e-18:626:67:644 HATPase_c#4
672-787 aa · 116 aa · 12.4% of protein
Raw token
HATPase_c:672:8.3e-31:787:116:1095 Response_reg#5
812-929 aa · 118 aa · 12.6% of protein
Raw token
Response_reg:812:1.75e-27:929:118:111- Raw architecture: SBP_bac_3:53:1.23e-18:247:208:224#SBP_bac_3:287:0.00000000000000639:488:215:224#HisKA:560:2.87e-18:626:67:64#HATPase_c:672:8.3e-31:787:116:109#Response_reg:812:1.75e-27:929:118:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003478165::NZ_QUER01000001.1::G00012
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span372118-374937Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA40_01600RefSeq proteinWP_103731766.1
Context group ID
GCF_003478165::NZ_QUER01000001.1::G00012Context members
DXA40_RS01600
Partner locus tags
DXA40_RS01600
Partner old locus tags
DXA40_01600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_103731766.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7F974Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7F974_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA40_RS01600Primary locus identifier stored in the genes table.
Old locus tagDXA40_01600Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUER01000001.1Sequence record reported by the local genomic context database.
Genomic interval372 118-374 937 nt2 820 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span372 118-374 937 ntGCF_003478165::NZ_QUER01000001.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478165::NZ_QUER01000001.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUER01000001.1All displayed genes belong to this local TCS context.
Neighborhood span372 118-374 937 nt2 820 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
372 118 nt374 937 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA40_RS01600GCF_003478165#DXA40_RS01600
HKHybridCurrent focus
372 118-374 937 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS01600The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0341405
Simplified PFAM architecture for HKOC_0341405
PFAM domain coverage: 697 / 939 aa (74.2%)
1 aa939 aa
SBP_bac_3SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[53-249] | SBP_bac_3[289-489] | HisKA[560-626] | HATPase_c[672-786] | Response_reg[812-928]
- Domain count: 5
- Matched identifier: HKOC_0341405
- Positioned domains: SBP_bac_3 53-249 ; SBP_bac_3 289-489 ; HisKA 560-626 ; HATPase_c 672-786 ; Response_reg 812-928
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS01600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 286 · GCF_003478165
AssemblyASM347816v1 · Scaffoldhaploid
Genome composition6 349 015 bp · 46,5% GCBlautia sp. OF01-4LB
Signal transduction countsGenes 264 · HK 135 · RR 125CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key