1 Response_reg#1
4-111 aa · 108 aa · 46.2% of protein
Raw token
Response_reg:4:5.87e-20:111:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HXZ52_RS10150
Response regulator LytTR family
Clostridium cadaveris · GCF_013390975
ClassRRTypeLytTRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013390975#HXZ52_RS10150Stable P2CS identifier used across views.
GenomeGCF_013390975Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage201 / 234 aa (85.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 LytTR#2
134-226 aa · 93 aa · 39.7% of protein
Raw token
LytTR:134:0.000000000000014:226:98:98- Raw architecture: Response_reg:4:5.87e-20:111:112:111#LytTR:134:0.000000000000014:226:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013390975::NZ_JACATM010000012.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span17676-18380Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHXZ52_10150RefSeq proteinWP_027640253.1
Context group ID
GCF_013390975::NZ_JACATM010000012.1::G00011Context members
HXZ52_RS10150
Partner locus tags
HXZ52_RS10150
Partner old locus tags
HXZ52_10150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027640253.1Primary protein accession used for annex mappings.
UniProt accessionA0A1I2MFS4Primary UniProt accession resolved in the annex database.
UniProt IDA0A1I2MFS4_9CLOTDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHXZ52_RS10150Primary locus identifier stored in the genes table.
Old locus tagHXZ52_10150Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACATM010000012.1Sequence record reported by the local genomic context database.
Genomic interval17 676-18 380 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span17 676-18 380 ntGCF_013390975::NZ_JACATM010000012.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013390975::NZ_JACATM010000012.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACATM010000012.1All displayed genes belong to this local TCS context.
Neighborhood span17 676-18 380 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 676 nt18 380 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HXZ52_RS10150GCF_013390975#HXZ52_RS10150
RRLytTRCurrent focus
17 676-18 380 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0117405Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1048888
Simplified PFAM architecture for RROC_1048888
PFAM domain coverage: 199 / 234 aa (85.0%)
1 aa234 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-111] | LytTR[135-225]
- Domain count: 2
- Matched identifier: RROC_1048888
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; LytTR 135-225 ; LytTR 135-225
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0117405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 529 · GCF_013390975
AssemblyASM1339097v1 · Contighaploid
Genome composition3 614 608 bp · 31,5% GCClostridium cadaveris
Signal transduction countsGenes 78 · HK 38 · RR 39CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key